PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla000807 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | YABBY | ||||||||
Protein Properties | Length: 186aa MW: 20701.8 Da PI: 7.9306 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 179.9 | 1.4e-55 | 9 | 170 | 4 | 167 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 +sseq+ yvqC+ C+til+v+vP++ l++vv vrCG C+ llsvn+ak s ll++ sh l + ++++ l+s +++ +++++ Cla000807 9 ADSSEQIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCSGLLSVNMAKPSfipfDLLTSLSH--------NLFNVGQKHYCLDSLSNTSDLITSYHNII 100 679*******************************************99988444444455444........44556666666777777777766666665 PP YABBY 100 klsenedee..vprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkih 167 + e++d+ +p +p v++PPek+qr+Psayn+fikeei+r+ka+nP ++h+eaf +aaknWah+P++ Cla000807 101 HNHEDDDDViiIPPTPVVNKPPEKKQRAPSAYNQFIKEEIRRLKAENPAMAHKEAFKTAAKNWAHLPPVN 170 544444444114555669*************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 8.0E-54 | 11 | 170 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.09E-9 | 116 | 168 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.9E-6 | 120 | 168 | IPR009071 | High mobility group box domain |
CDD | cd00084 | 4.59E-6 | 127 | 168 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MSTVEQLLAD SSEQIRYVQC GLCSTILLVN VPYSNLSMVV SVRCGNCSGL LSVNMAKPSF 60 IPFDLLTSLS HNLFNVGQKH YCLDSLSNTS DLITSYHNII HNHEDDDDVI IIPPTPVVNK 120 PPEKKQRAPS AYNQFIKEEI RRLKAENPAM AHKEAFKTAA KNWAHLPPVN AAAGVDHMTM 180 RKKNVM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004143066.2 | 1e-109 | PREDICTED: axial regulator YABBY 4-like | ||||
Swissprot | Q9LDT3 | 9e-50 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A0A0LK60 | 1e-108 | A0A0A0LK60_CUCSA; Uncharacterized protein | ||||
STRING | VIT_01s0127g00330.t01 | 2e-59 | (Vitis vinifera) | ||||
STRING | XP_004143066.1 | 2e-59 | (Cucumis sativus) | ||||
STRING | XP_004172999.1 | 2e-59 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6144 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 2e-48 | YABBY family protein |
Publications ? help Back to Top | |||
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