PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla000604 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | Dof | ||||||||
Protein Properties | Length: 264aa MW: 29211.2 Da PI: 8.4144 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.2 | 2.1e-39 | 35 | 91 | 6 | 62 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 lkcprCdstntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP+Ggg+rk kk + Cla000604 35 LKCPRCDSTNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKTKKLK 91 79***************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-26 | 33 | 89 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.45 | 35 | 89 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.9E-33 | 35 | 89 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 37 | 73 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MKASLEEEIR QKSSSSGRTK QNNNGDHCEQ ELGGLKCPRC DSTNTKFCYY NNYSLTQPRH 60 FCKTCRRYWT KGGALRNVPI GGGCRKTKKL KSSSSSSSSV TTAAPLPDHS SLAFKFFAGI 120 SPPPPPPSVD FGAIGGEGSC LHLASSIESL SSLNQDLHWK LQQQRLAMIF GDQEQQQQSQ 180 NKDNQNHNFI QPILFHNLHH QKSAAPSTTT TTISDQWFFP NQVTATNNIA SRSVDDGSGW 240 NSNNNDNHGG IQAWEDLHHF TAFP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681857 | 1e-72 | LN681857.1 Cucumis melo genomic scaffold, anchoredscaffold00023. | |||
GenBank | LN713260 | 1e-72 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008450228.1 | 1e-101 | PREDICTED: dof zinc finger protein DOF5.7 | ||||
Swissprot | Q9LSL6 | 1e-33 | DOF57_ARATH; Dof zinc finger protein DOF5.7 | ||||
TrEMBL | A0A1S3BNR3 | 2e-99 | A0A1S3BNR3_CUCME; dof zinc finger protein DOF5.7 | ||||
STRING | XP_008450228.1 | 1e-100 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3854 | 34 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65590.1 | 3e-34 | Dof family protein |
Publications ? help Back to Top | |||
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