PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla000582 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | G2-like | ||||||||
Protein Properties | Length: 290aa MW: 32835.9 Da PI: 6.3284 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101 | 7.6e-32 | 10 | 64 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt+eLH+rFveav++LGG++kAtPk+++++m++ gL+l+h+kSHLQkYRl Cla000582 10 KPRLKWTSELHQRFVEAVNHLGGADKATPKSLMRVMGITGLSLYHLKSHLQKYRL 64 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.623 | 7 | 67 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-29 | 8 | 65 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.88E-16 | 9 | 65 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.5E-23 | 10 | 65 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.6E-8 | 12 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 5.9E-23 | 106 | 153 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MNLVLSTDAK PRLKWTSELH QRFVEAVNHL GGADKATPKS LMRVMGITGL SLYHLKSHLQ 60 KYRLGKSQPS ETNAQLKLEE MQRKGGNFDG EENKDRSQNH NKTESMKISE ALEMQMEVQK 120 RLQEQIEVQR HLQLRIEAQG KYLKTVLRKA QETIAGYGCC SEALEEAKAE LSQLASMVSS 180 GCQSSSLSEL TDSTELNFKG IERVGRRMCS IESSLTSSET SEEAPITKKR KGKEKEKEKE 240 QSSSVSEGDC KRLTMHKSDE EHEEFRMIDL NDSQFDDNTS GIESQLIEFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-18 | 9 | 66 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-18 | 9 | 66 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 5e-18 | 10 | 66 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-18 | 10 | 66 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-18 | 10 | 66 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-18 | 10 | 66 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-18 | 9 | 66 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-18 | 9 | 66 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-18 | 9 | 66 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-18 | 9 | 66 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-18 | 9 | 66 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-18 | 9 | 66 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681846 | 1e-146 | LN681846.1 Cucumis melo genomic scaffold, anchoredscaffold00009. | |||
GenBank | LN713259 | 1e-146 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004138915.1 | 1e-150 | PREDICTED: myb family transcription factor APL | ||||
Swissprot | F4I274 | 3e-71 | PHL8_ARATH; Myb family transcription factor PHL8 | ||||
TrEMBL | A0A0A0LJX4 | 1e-149 | A0A0A0LJX4_CUCSA; Uncharacterized protein | ||||
STRING | XP_004138915.1 | 1e-150 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5218 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69580.2 | 9e-61 | G2-like family protein |
Publications ? help Back to Top | |||
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