PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla000582
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family G2-like
Protein Properties Length: 290aa    MW: 32835.9 Da    PI: 6.3284
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla000582genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1017.6e-321064155
    G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
               kprl+Wt+eLH+rFveav++LGG++kAtPk+++++m++ gL+l+h+kSHLQkYRl
  Cla000582 10 KPRLKWTSELHQRFVEAVNHLGGADKATPKSLMRVMGITGLSLYHLKSHLQKYRL 64
               79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.623767IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-29865IPR009057Homeodomain-like
SuperFamilySSF466897.88E-16965IPR009057Homeodomain-like
TIGRFAMsTIGR015574.5E-231065IPR006447Myb domain, plants
PfamPF002497.6E-81263IPR001005SANT/Myb domain
PfamPF143795.9E-23106153IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MNLVLSTDAK PRLKWTSELH QRFVEAVNHL GGADKATPKS LMRVMGITGL SLYHLKSHLQ  60
KYRLGKSQPS ETNAQLKLEE MQRKGGNFDG EENKDRSQNH NKTESMKISE ALEMQMEVQK  120
RLQEQIEVQR HLQLRIEAQG KYLKTVLRKA QETIAGYGCC SEALEEAKAE LSQLASMVSS  180
GCQSSSLSEL TDSTELNFKG IERVGRRMCS IESSLTSSET SEEAPITKKR KGKEKEKEKE  240
QSSSVSEGDC KRLTMHKSDE EHEEFRMIDL NDSQFDDNTS GIESQLIEFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-18966158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-18966158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-181066157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-181066157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-181066157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-181066157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-18966158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-18966158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-18966158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-18966158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-18966158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-18966158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818461e-146LN681846.1 Cucumis melo genomic scaffold, anchoredscaffold00009.
GenBankLN7132591e-146LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138915.11e-150PREDICTED: myb family transcription factor APL
SwissprotF4I2743e-71PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A0A0LJX41e-149A0A0A0LJX4_CUCSA; Uncharacterized protein
STRINGXP_004138915.11e-150(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52183253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.29e-61G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]