PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla000557
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ARF
Protein Properties Length: 802aa    MW: 88840.9 Da    PI: 6.9739
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla000557genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.82.1e-23169270199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f+k+lt sd++++g +++p++ ae++       ++ +  s++l+ +d++g +W++k+iyr++++r++lt+GW+ Fv++++L +gD v+F   + +++el+
  Cla000557 169 FCKTLTASDTSTHGGFSVPRRAAEDCfppldytQLRP--SQELIAKDLHGVEWRFKHIYRGQPRRHLLTTGWSIFVSQKNLTSGDAVLFL--RGENGELR 264
                99****************************9887775..458************************************************..4499999* PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                ++++r+
  Cla000557 265 LGIRRA 270
                ***996 PP
2Auxin_resp121.46.6e-40295376182
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                 +++a+stks+F+v+YnPra +++Fv++++k++k+++++v+vG+Rfkm+fe++ds+err+ G+vvg+ d+dp+rWpnSkWr+L
   Cla000557 295 VVKAISTKSTFDVFYNPRAYHAQFVISCQKYVKSINNPVTVGTRFKMRFEMDDSPERRFNGVVVGIGDMDPFRWPNSKWRCL 376
                 6899*****************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.7E-39162278IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.16E-43163280IPR015300DNA-binding pseudobarrel domain
CDDcd100172.38E-22167269No hitNo description
PfamPF023622.5E-21169270IPR003340B3 DNA binding domain
PROSITE profilePS5086313.028169271IPR003340B3 DNA binding domain
SMARTSM010198.7E-24169271IPR003340B3 DNA binding domain
PfamPF065079.4E-34296376IPR010525Auxin response factor
PROSITE profilePS5174521.617674756IPR000270PB1 domain
SuperFamilySSF542772.94E-8676753No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 802 aa     Download sequence    Send to blast
MEIDLNQTAS EVGKNAYCYG NCEEGLCNCC LSSSTSSCSS NSSPTPASSS TYLELWHACA  60
GPLTSLPKKG NVVVYFPQGH LEQIASASPF SPMEMRTFDL QPQILCRVIN VHLLANKEND  120
EVYTQLTLLP LPELVGTGLE GKELEELALN GADGDGSGGS PTRSTPHMFC KTLTASDTST  180
HGGFSVPRRA AEDCFPPLDY TQLRPSQELI AKDLHGVEWR FKHIYRGQPR RHLLTTGWSI  240
FVSQKNLTSG DAVLFLRGEN GELRLGIRRA VRPRNGLPVS IVGSQNSCAN DLARVVKAIS  300
TKSTFDVFYN PRAYHAQFVI SCQKYVKSIN NPVTVGTRFK MRFEMDDSPE RRFNGVVVGI  360
GDMDPFRWPN SKWRCLTVRW DKDSDHQERV SPWEIDPSVS LPPLSVQSSP RLKKLRTSLQ  420
AAPPNNAFTG RGGFMDFEDS IRSSKVLQGQ ENIGVVSPFY GCDTAKRSLE FDVRSSAQQN  480
QVSGGVEKLN IGDYVKVHAN SSFTGFMESD RFLKVLQGQE ICSLRPPTRK PEYSLGVWGK  540
FNLSDNSFNT FQSPNSNFYH MASNGAQNMY FPHSEMYSTG QAAMMRSNDS NFPRENALFN  600
PSAVGASVIR TKMERTNHSL DRESLHLVSA PPTLGSNMRN SKDENVSENP TGCKLFGFSL  660
TTETATNMQS SGKRSCTKVH KQGSLVGRAI DLSRLNGYPD LISELERLFS MEGLLKDPDK  720
GWRVLYTDNE NDVMVVGDYP WRDFCDAVSK IHIHTQEEVE KMTNGVISDD TQSCLDQAPL  780
CMEASKSSSV GQPDSPPTVV RV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-118373972354Auxin response factor 1
4ldw_A1e-118373972354Auxin response factor 1
4ldw_B1e-118373972354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU3234090.0KU323409.1 UNVERIFIED: Trichosanthes dioica clone TdARF_7 auxin response factor 4-like mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011657217.10.0PREDICTED: auxin response factor 4
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLA0A0A0KFX80.0A0A0A0KFX8_CUCSA; Auxin response factor
STRINGXP_004169481.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52363252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]