PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla000540 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | Dof | ||||||||
Protein Properties | Length: 248aa MW: 27286.2 Da PI: 8.733 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.9 | 6e-40 | 21 | 80 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e+al+cprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+ Cla000540 21 PEQALRCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRP 80 7899*****************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-27 | 19 | 74 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.7E-34 | 23 | 79 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.581 | 25 | 79 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 27 | 63 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MLAISCPKVQ QENRKPMRPQ PEQALRCPRC DSTNTKFCYY NNYSLSQPRY FCKSCRRYWT 60 KGGTLRNVPV GGGCRKNKRP SPSTSSSSSP SSKRSHDQAA NSSRLMLTDT HLPSLAFEST 120 DLSLAFAKLQ HQSNGQIGLF DTTHNNFHNL YSGFGTGSSG EVENGGFPHF ENYNGSGVAS 180 TATATAMKQE LVCNGDQNNM VLLGFPWQFN NNGDGNYMGD LDAGRESWNF NGNGIASSWH 240 GLLNSPLM |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681922 | 0.0 | LN681922.1 Cucumis melo genomic scaffold, anchoredscaffold00082. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004149558.1 | 1e-168 | PREDICTED: dof zinc finger protein DOF5.3-like | ||||
TrEMBL | A0A0A0KHN1 | 1e-167 | A0A0A0KHN1_CUCSA; Uncharacterized protein | ||||
STRING | XP_004163372.1 | 1e-168 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5026 | 30 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 9e-41 | TARGET OF MONOPTEROS 6 |