PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla000378

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

NAC

Protein Properties

Length: 298aa MW: 33553.3 Da PI: 9.5972

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla000378	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.8	5.5e-33	46	192	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk........lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.......... 77 lp+G++F+Ptd+el+ ++L+ kv ++ + + +i+ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+ Cla000378 46 LPAGVKFDPTDQELL-QHLEGKVGSDAhklllhplI---DefipTIQWEqGICYTHPQKLP-GVRKDGLVRHFFHRPSKAYTTGTRKRRKvhadaedaeg 140 799**********.99*9999566664432...143333554447******.566666788**************86777777665 PP NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++vl+ +g+++g kk+Lv+y g+++k+ekt+W+mh+y+l Cla000378 141 EGETRWHKTGKTRPVLV-GGRVKGYKKILVLYtnYGKQKKPEKTNWIMHQYHL 192 44788********.9*********6658999**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-37	42	211	IPR003441	NAC domain
PROSITE profile	PS51005	32.164	46	211	IPR003441	NAC domain
Pfam	PF02365	4.4E-15	47	192	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MTQFLDKNNN VSAQETSRND STSSCPSCGH QIKSQDKGGI HTLPGLPAGV KFDPTDQELL 60 QHLEGKVGSD AHKLLLHPLI DEFIPTIQWE QGICYTHPQK LPGVRKDGLV RHFFHRPSKA 120 YTTGTRKRRK VHADAEDAEG EGETRWHKTG KTRPVLVGGR VKGYKKILVL YTNYGKQKKP 180 EKTNWIMHQY HLGSSEEEKD GEIVVSKVFY QTQPRQCGNS LQKESISLKF RGQKSHNSSN 240 NNNNNNHHHH HGVHDNNLVD FYNPSFISFE SNDQNRSPSN NSHLIAPFAV HGGSSVVS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00459	DAP	Transfer from AT4G28500	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681916	1e-143	LN681916.1 Cucumis melo genomic scaffold, anchoredscaffold00037.
GenBank	LN713265	1e-143	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008455949.1	0.0	PREDICTED: NAC domain-containing protein 73-like
Swissprot	O49459	1e-114	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A1S3C1N7	0.0	A0A1S3C1N7_CUCME; NAC domain-containing protein 73-like
STRING	XP_008455949.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1228	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-112	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]