PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla000218

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

bHLH

Protein Properties

Length: 317aa MW: 35559.9 Da PI: 6.3189

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla000218	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.4	3e-14	123	169	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L Cla000218 123 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 169 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.136	120	169	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-11	123	169	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.29E-15	124	174	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.8E-15	124	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-13	126	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.72E-5	133	172	No hit	No description
Gene3D	G3DSA:3.30.70.260	2.2E-4	207	261	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MKEEGECFEE QLVIQQFQTM QQNGDVFGGG GFIFPEVSPL MFPATTVHQV HGFNPFSNPT 60 ILDHHDSFIS PLQPPASYGS FFNRRNASSL QFPPYDNVGC APFELTKMTA QEIMDAKALA 120 ASKSHSEAER RRRERINNHL AKLRSLLPNT TKTDKASLLA EVIQHVKELK RQTTLIADVS 180 LLPTELDELS VDVDASDEDG KSVIKASFCC EDRSDLLPQI IKTLKSLHLR TLKAEITTLG 240 GRVRNVLFIT SDDDSSNDQQ DQAQQHQHHQ YSISSIQEAL KGVMEKVCSE DQSSSGSIKR 300 QRTNNHNNIN IIQHRSF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	128	133	ERRRRE

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681845	1e-138	LN681845.1 Cucumis melo genomic scaffold, anchoredscaffold00043.
GenBank	LN713259	1e-138	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008457214.1	1e-155	PREDICTED: transcription factor bHLH30-like
Refseq	XP_008457215.1	1e-155	PREDICTED: transcription factor bHLH30-like
Swissprot	Q9S7Y1	4e-86	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A1S3C4K3	1e-153	A0A1S3C4K3_CUCME; transcription factor bHLH30-like
STRING	XP_008457214.1	1e-154	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4589	34	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	7e-72	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]