PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla000091 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | Dof | ||||||||
Protein Properties | Length: 163aa MW: 17640.8 Da PI: 8.2115 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 95.4 | 4.1e-30 | 7 | 66 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++a kcprC+s +tkfCyynny+ sqPr++Ck+C ryWt GG l nv +Ggg+ ++kk+s Cla000091 7 SDAFKCPRCHSLHTKFCYYNNYNYSQPRHLCKTCCRYWTLGGLLCNVSIGGGTHRSKKNS 66 56789************************************************9999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-18 | 2 | 64 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 8.0E-26 | 9 | 64 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 24.856 | 10 | 64 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 12 | 48 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
QNIQSKSDAF KCPRCHSLHT KFCYYNNYNY SQPRHLCKTC CRYWTLGGLL CNVSIGGGTH 60 RSKKNSKAKT AIVRDSPPSN SAVLRSDLEM FSIMLKLNQA GDWCGWIENG RELDGGIVGA 120 ARDSTVEGSG SSDHLATSGG NEGMVEISVA SPSMEVPGSN SMN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008445935.1 | 3e-46 | PREDICTED: dof zinc finger protein DOF3.4-like | ||||
Swissprot | Q8LDR0 | 3e-23 | DOF54_ARATH; Dof zinc finger protein DOF5.4 | ||||
TrEMBL | A0A1S3BDV3 | 7e-45 | A0A1S3BDV3_CUCME; dof zinc finger protein DOF3.4-like | ||||
STRING | XP_008445935.1 | 1e-45 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21361 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 1e-25 | DOF zinc finger protein 1 |
Publications ? help Back to Top | |||
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