PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.9781s0007.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 233aa    MW: 26221.7 Da    PI: 8.3556
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.9781s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.9e-171461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd+ l+d+++ +G g+W++ ++  g+ R++k+c++rw +yl
  Cagra.9781s0007.1.p 14 KGAWTKEEDQCLIDYIRNHGEGSWRSLPNSAGLLRCGKSCRLRWINYL 61
                         79******************************99************97 PP
2Myb_DNA-binding521.6e-1667111147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg++T  Ed+++v+++ ++G++ W++Ia +++ gRt++++k++w+++
  Cagra.9781s0007.1.p  67 RGNFTDGEDQIIVKLHSLFGNK-WSLIAGKLP-GRTDNEIKNYWNTH 111
                          89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.01961IPR017930Myb domain
SuperFamilySSF466898.24E-2913108IPR009057Homeodomain-like
SMARTSM007174.3E-121363IPR001005SANT/Myb domain
PfamPF002499.6E-161461IPR001005SANT/Myb domain
CDDcd001673.00E-91661No hitNo description
PROSITE profilePS5129427.13862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.9E-2765116IPR009057Homeodomain-like
SMARTSM007172.4E-1566114IPR001005SANT/Myb domain
PfamPF002492.7E-1467111IPR001005SANT/Myb domain
CDDcd001672.67E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009631Biological Processcold acclimation
GO:0009651Biological Processresponse to salt stress
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDQCLIDYIR NHGEGSWRSL PNSAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TDGEDQIIVK LHSLFGNKWS LIAGKLPGRT DNEIKNYWNT HIKRKLLSRG  120
IDPKTHRSIV EPNTTPFHSL TRDVKSTCPD HVKPKTYTLS ENCATTSGTT TDDDLWLSVD  180
RDFSYDIGDK ELNLELTLGS GLASWGARDV VCVCNLGSHE PCMNCQKAKW VL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. {ECO:0000250|UniProtKB:Q38850}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.9781s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303828.21e-168transcription factor MYB8
SwissprotQ9SDS81e-117MYB8_ARATH; Transcription factor MYB8
TrEMBLR0GLS91e-141R0GLS9_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.9781s0007.1.p1e-172(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35515.11e-119high response to osmotic stress 10
Publications ? help Back to Top
  1. Zhu J, et al.
    Retraction for Zhu et al., HOS10 encodes an R2R3-type MYB transcription factor essential for cold acclimation in plants.
    Proc. Natl. Acad. Sci. U.S.A., 2010. 107(31): p. 13972
    [PMID:20622156]