PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.9571s0003.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | C2H2 | ||||||||
Protein Properties | Length: 268aa MW: 28750.8 Da PI: 5.2889 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00015 | 241 | 263 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+k+F++ L++H + H Cagra.9571s0003.1.p 241 SCGSCKKTFNSGNALESHNKAkH 263 7*****************88766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03066 | 3.4E-7 | 3 | 170 | No hit | No description |
PROSITE profile | PS50157 | 10.533 | 240 | 267 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 242 | 263 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009294 | Biological Process | DNA mediated transformation | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010162 | Biological Process | seed dormancy process | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MEFWGIEVKP GKPVTVETEF DRLIHISQAS LGECKNKKEE TVAVHVKFGD KKLLLGTLST 60 VNIPQIFCDL VFQNDFEISH NGNGSVHFVG YTSPNCADEF GDDDFYDSEE EEEKVPATVT 120 ANGNAAKPKA KPAQVTKNAK AADVDEEDDS DSEGMDFDED EDSEEEEETP TPKKAVSGKK 180 RANEEAPKTP VSSKKAKVAV TPQKTDEKKK GGHTATPHPG KKGAKTPTTA AQSPKSASQI 240 SCGSCKKTFN SGNALESHNK AKHAAAK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Required for histone H3 'Lys-9' deacetylation. Involved in rRNA gene silencing in nucleolar dominance. Seems to be implicated in the regulation of genes involved in seeds development. {ECO:0000269|PubMed:10792817, ECO:0000269|PubMed:12694598, ECO:0000269|PubMed:14992728, ECO:0000269|PubMed:15144374}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.9571s0003.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF195545 | 2e-40 | AF195545.1 Arabidopsis thaliana putative histone deacetylase (HD2A) mRNA, complete cds. | |||
GenBank | AY065396 | 2e-40 | AY065396.1 Arabidopsis thaliana putative histone deacetylase (At3g44750) mRNA, complete cds. | |||
GenBank | AY096729 | 2e-40 | AY096729.1 Arabidopsis thaliana putative histone deacetylase (At3g44750) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023638513.1 | 1e-165 | histone deacetylase HDT1 | ||||
Swissprot | Q9FVE6 | 3e-86 | HDT1_ARATH; Histone deacetylase HDT1 | ||||
TrEMBL | R0FQZ9 | 1e-151 | R0FQZ9_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.9571s0003.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2027 | 26 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44750.2 | 4e-84 | histone deacetylase 3 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.9571s0003.1.p |
Publications ? help Back to Top | |||
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