PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.8966s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB | ||||||||
Protein Properties | Length: 347aa MW: 39731.9 Da PI: 10.1019 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.3 | 4.2e-14 | 145 | 191 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W Ed+ll + vk+ G+++W+ Ia+ ++ gR +kqc++rw+++l Cagra.8966s0002.1.p 145 KGQWNLAEDKLLRKMVKRIGTRRWTEIAKSFQ-GRVGKQCRERWHNHL 191 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 52.2 | 1.4e-16 | 197 | 239 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++W++eEd++lv+ +kq G++ W+ Ia++++ gR+++ +k++w+ Cagra.8966s0002.1.p 197 KNAWSEEEDQILVQIHKQVGNK-WTQIAKRLP-GRSENIVKNHWN 239 689*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.658 | 140 | 191 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.63E-28 | 144 | 238 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-12 | 144 | 193 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-20 | 146 | 194 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 1.4E-15 | 148 | 205 | No hit | No description |
CDD | cd00167 | 1.12E-11 | 148 | 191 | No hit | No description |
PROSITE profile | PS51294 | 23.888 | 192 | 246 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-21 | 195 | 244 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-14 | 196 | 244 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.85E-11 | 199 | 242 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010439 | Biological Process | regulation of glucosinolate biosynthetic process | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MYHQNLISSV PNQISNPHNC VTQNHLFPIL PPNEIPSTYP FMGKSSYSNT DAFEGFQHNI 60 TGDLKFPKTY YTPFPVTSQG IPYDMHGFQV NPMLNDISHN QGNITGNHEP TLVHFMVESQ 120 QTNVSEPEEK VIIKTDQKKK GISHKGQWNL AEDKLLRKMV KRIGTRRWTE IAKSFQGRVG 180 KQCRERWHNH LRPDIQKNAW SEEEDQILVQ IHKQVGNKWT QIAKRLPGRS ENIVKNHWNA 240 TKRRLLSMKN KRSGALPPPN NTLENYIWST AVNNLNRGAV ANAEMENNKR ENVADGVMMN 300 LNLDATRQTA ATTSVYVPEK TVYTWGNLKA NSEILNDQFM NKKTFT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 2e-38 | 145 | 244 | 4 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 2e-38 | 145 | 244 | 4 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes the motif 5'-TAACGG-3' in the promoter of target genes (PubMed:27681170). Promotes vegetative-to-embryonic transition and the formation of somatic embryos from root explants in a WUS-independent manner (PubMed:18695688). Together with MYB118, activates the transcription of S-ACP-DES2/AAD2 and S-ACP-DES3/AAD3 thus promoting the biosynthesis of omega-7 monounsaturated fatty acid in seed endosperm (PubMed:27681170). {ECO:0000269|PubMed:18695688, ECO:0000269|PubMed:27681170}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.8966s0002.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by LEC2 but repressed by MYB118. {ECO:0000269|PubMed:27681170}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006285962.2 | 0.0 | transcription factor MYB115 | ||||
Swissprot | Q1PDP9 | 1e-139 | MY115_ARATH; Transcription factor MYB115 | ||||
TrEMBL | R0H2H4 | 0.0 | R0H2H4_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.8966s0002.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13303 | 14 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G40360.1 | 1e-142 | myb domain protein 115 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.8966s0002.1.p |
Publications ? help Back to Top | |||
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