PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.8874s0008.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | SBP | ||||||||
Protein Properties | Length: 360aa MW: 40070.7 Da PI: 8.5477 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.4 | 2.8e-40 | 138 | 214 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cq++gC+ dls+ak+yhr+h+vCe+hsk+p+v+vsgle+rfCqqCsrfh++sefDe+krsCr+rL++hn+rrrk+q Cagra.8874s0008.3.p 138 RCQIDGCDLDLSTAKDYHRKHRVCEKHSKCPKVTVSGLERRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNARRRKPQ 214 6**************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.2E-33 | 131 | 200 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.308 | 136 | 213 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.62E-37 | 137 | 214 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.8E-31 | 139 | 212 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010358 | Biological Process | leaf shaping | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MDCNMVSSSQ WDWENLIMSN PSKTENEKKL QSTEWEFEKG EGIESIIPDF LGFERVSSGS 60 ATSFWHTAVS KSSQSTSINS SSPEVKQCKL ASQSSPGDSC SIIDFSQVKA STALELLTPS 120 VVARKKSKSC GQSMQVPRCQ IDGCDLDLST AKDYHRKHRV CEKHSKCPKV TVSGLERRFC 180 QQCSRFHAVS EFDEKKRSCR KRLSHHNARR RKPQGIFPLN PERVYDRRQH TSMLWNGLSL 240 NTRSEETYAW GTTYETKPTQ MESGFTLSFQ RGNGPEEQLF ASSSRSFSVF QSSGGFSAGK 300 SNVQLPGKGL GECSGGLHES QDFYSALSLL STSSEPRGTK HNPVVEPQPI FGTYPTHFI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-26 | 139 | 212 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 194 | 211 | KKRSCRKRLSHHNARRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.8874s0008.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ011637 | 0.0 | AJ011637.1 Arabidopsis thaliana (ecotype Columbia) mRNA for squamosa promoter binding protein-like 10. | |||
GenBank | AY074853 | 0.0 | AY074853.1 Arabidopsis thaliana At1g27370/F17L21_16 mRNA, complete cds. | |||
GenBank | AY142028 | 0.0 | AY142028.1 Arabidopsis thaliana At1g27370/F17L21_16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006304999.1 | 0.0 | squamosa promoter-binding-like protein 10 | ||||
Refseq | XP_023646039.1 | 0.0 | squamosa promoter-binding-like protein 10 | ||||
Refseq | XP_023646040.1 | 0.0 | squamosa promoter-binding-like protein 10 | ||||
Swissprot | Q8S9L0 | 0.0 | SPL10_ARATH; Squamosa promoter-binding-like protein 10 | ||||
TrEMBL | R0GPP4 | 0.0 | R0GPP4_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.8874s0008.1.p | 0.0 | (Capsella grandiflora) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27370.4 | 0.0 | squamosa promoter binding protein-like 10 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.8874s0008.3.p |
Publications ? help Back to Top | |||
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