PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.8766s0002.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

G2-like

Protein Properties

Length: 498aa MW: 56415.4 Da PI: 4.8719

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.8766s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.3	5.6e-31	330	384	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWtpeLHe Fveav++ GG +kAtPk +l++m+v+gL ++hvkSHLQkYR+ Cagra.8766s0002.1.p 330 KRRMRWTPELHEVFVEAVNHFGGVNKATPKGVLKHMNVEGLNIYHVKSHLQKYRS 384 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.957	327	387	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.4E-29	328	386	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.23E-17	329	384	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.4E-23	330	384	IPR006447	Myb domain, plants
Pfam	PF00249	2.6E-8	332	383	IPR001005	SANT/Myb domain
Pfam	PF14379	2.7E-17	418	461	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MENRRSRSVP DELSDVSDTS DLIPSVQNPS VPADMSFDSE QNQLMARPYH LLFDNDGVVD 60 HIYSSDLSAN DGAVGYISSS DLSASDGAVG HIYSSDLHNS FVPESSDWIR SPLGDIFDFP 120 EGSPIQSSQM DDSVILASDD GDSLMSAVMD ELFLATDFNS ASEVQQPSMQ LQIQQPLHED 180 ILFQVQQPSP QSQIQHTLHE ERLFQVEQQS TQLQIQHPQV SLHEEMLFQN QQQSRQSQIQ 240 QPQVSLHEEM FFQDQQQSRQ LQIQQPQVSL HEEMLFQDQQ QSRQSHIQQP QVVLQQPSPC 300 VELRPLVRTV SSNSNFNSSS SNSDNNAAAK RRMRWTPELH EVFVEAVNHF GGVNKATPKG 360 VLKHMNVEGL NIYHVKSHLQ KYRSARHTSE PSEAASPEPK LSPFEQITSI DTKRGIYITE 420 ALRFQLEAQK QLHEQLEIQR KMQIRLEEQG NALSLMIEKQ RLVFGKLAQE EKTSAKTPEN 480 GSEESDSPRS KRQRNKK*

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MENRRSRSVP DELSDVSDTS DLIPSVQNPS VPADMSFDSE QNQLMARPYH LLFDNDGVVD  60
HIYSSDLSAN DGAVGYISSS DLSASDGAVG HIYSSDLHNS FVPESSDWIR SPLGDIFDFP  120
EGSPIQSSQM DDSVILASDD GDSLMSAVMD ELFLATDFNS ASEVQQPSMQ LQIQQPLHED  180
ILFQVQQPSP QSQIQHTLHE ERLFQVEQQS TQLQIQHPQV SLHEEMLFQN QQQSRQSQIQ  240
QPQVSLHEEM FFQDQQQSRQ LQIQQPQVSL HEEMLFQDQQ QSRQSHIQQP QVVLQQPSPC  300
VELRPLVRTV SSNSNFNSSS SNSDNNAAAK RRMRWTPELH EVFVEAVNHF GGVNKATPKG  360
VLKHMNVEGL NIYHVKSHLQ KYRSARHTSE PSEAASPEPK LSPFEQITSI DTKRGIYITE  420
ALRFQLEAQK QLHEQLEIQR KMQIRLEEQG NALSLMIEKQ RLVFGKLAQE EKTSAKTPEN  480
GSEESDSPRS KRQRNKK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-25	329	387	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-25	329	387	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-25	329	387	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-25	329	387	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-25	329	387	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-25	329	387	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-25	329	387	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-25	329	387	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in male gametophyte development. {ECO:0000269\|PubMed:22101548}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.8766s0002.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023641974.1	0.0	myb family transcription factor PHL4
Swissprot	Q8GXC2	6e-90	PHL4_ARATH; Myb family transcription factor PHL4
TrEMBL	R0HY84	0.0	R0HY84_9BRAS; Uncharacterized protein
STRING	Cagra.8766s0002.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM856	27	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20400.1	8e-79	G2-like family protein

Link Out ? help Back to Top
Phytozome	Cagra.8766s0002.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]