PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.8694s0002.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | SBP | ||||||||
Protein Properties | Length: 434aa MW: 48134.5 Da PI: 8.5447 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.1 | 1.6e-40 | 180 | 255 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 CqvegC+ dls+ak+yhr+h++Ce hsk p+v+vsg+e+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk++ Cagra.8694s0002.2.p 180 CQVEGCNIDLSSAKDYHRKHRICENHSKFPKVVVSGVERRFCQQCSRFHCLSEFDEKKRSCRRRLSDHNARRRKPN 255 **************************************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.8E-33 | 174 | 241 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.812 | 177 | 254 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.27E-38 | 178 | 258 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.3E-31 | 180 | 253 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MECNAKPSMQ WEWENLISFG GSSGELPRKL KPMEWEIDGF DCTSLYSSSF AAVAYGGGGS 60 SGSDIAHAFS KSSKSTSLSS SSAEVRTYNF TSEAGESLPG ELGSSEEFAK GINTSPSLEL 120 SFGSGDPVLG LKLGKRTYFE DFWEVENSKG LALPVSLASS SVSPVKKSKP IPQKLQTPHC 180 QVEGCNIDLS SAKDYHRKHR ICENHSKFPK VVVSGVERRF CQQCSRFHCL SEFDEKKRSC 240 RRRLSDHNAR RRKPNPGRTY DGKPQVDFVW NRFALIHPRS EENFLWPSSK PVQSRGLIPQ 300 PTKTETSNKQ FTEHCGFGLL DPKTKTSRAE LFSKEKVTIS SHMGASQDLD GALSLLSNST 360 SWPVSSDQPR RFSLDHHPSS NLQPPAHRST TQLNSVSSYW QPNPPAVDGT TTQHRNGVGQ 420 FNENYFSLNE FYN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-26 | 180 | 253 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 235 | 252 | KKRSCRRRLSDHNARRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.8694s0002.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ011625 | 0.0 | AJ011625.1 Arabidopsis thaliana (ecotype Landsberg erecta) mRNA for squamosa promoter binding protein-like 2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023639524.1 | 0.0 | squamosa promoter-binding-like protein 2 isoform X1 | ||||
Refseq | XP_023639529.1 | 0.0 | squamosa promoter-binding-like protein 2 isoform X1 | ||||
Swissprot | Q9S840 | 0.0 | SPL2_ARATH; Squamosa promoter-binding-like protein 2 | ||||
TrEMBL | R0G9X7 | 0.0 | R0G9X7_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.8694s0002.1.p | 0.0 | (Capsella grandiflora) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 0.0 | squamosa promoter binding protein-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.8694s0002.2.p |