PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.8551s0004.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 337aa    MW: 37905.1 Da    PI: 6.6094
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.8551s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-19189239256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++ + kl+ge
  Cagra.8551s0004.1.p 189 LYRGVRQRH-WGKWVAEIRMPRN---RTRLWLGTFDTAEEAAMAYDREAFKLRGE 239
                          59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.54E-34188248No hitNo description
SuperFamilySSF541712.42E-23189247IPR016177DNA-binding domain
PROSITE profilePS5103223.051189246IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-32189247IPR001471AP2/ERF domain
SMARTSM003805.7E-41189252IPR001471AP2/ERF domain
PRINTSPR003672.6E-11190201IPR001471AP2/ERF domain
PfamPF008471.9E-13190239IPR001471AP2/ERF domain
PRINTSPR003672.6E-11212228IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MATAKNKGKS IRTLGTNEAE NMDVIELEEE LQFISSGKNK DSSSGSDMWF GDASSTSQRS  60
LRKTRTFDRH NPYLLSSYAT HHPPPTTTSC SVSSSSRVTF PFSIAPTIQN QQPFSYPNDL  120
SGHRQQQMIS FGPQLQVQPY LAQQQQQLLQ YWRDILKLSP SGRMMMMNML RQGGDLTRPP  180
MQPFSATKLY RGVRQRHWGK WVAEIRMPRN RTRLWLGTFD TAEEAAMAYD REAFKLRGET  240
ARLNFPELFL NKQEATPVHQ KQCETATASE ESSEKGEGDS SSALAVGGVS EETGWAEAWL  300
NAIPEEWGPG SPLWDDYHFP TSNHKDDHNS SSSDTI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-20188246160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in abiotic stress tolerance. Can directly regulate stress-related gene expression by binding to the DNA sequence 5'-[AG]CCGAC-3' (DRE element) of their promoter region. Involved in the regulation of stomatal closure movement under drought stress (PubMed:23625358). Acts as a positive regulator of drought stress response (PubMed:22095047). {ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.8551s0004.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress (PubMed:18550687, PubMed:22095047, PubMed:23625358). Induced by salt stress (PubMed:22095047). Induced by abscisic acid (ABA) and heat stress (PubMed:23625358). {ECO:0000269|PubMed:18550687, ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298084.10.0ethylene-responsive transcription factor ERF053
SwissprotQ9SKT11e-180ERF53_ARATH; Ethylene-responsive transcription factor ERF053
TrEMBLR0G6050.0R0G605_9BRAS; Uncharacterized protein
STRINGCagra.8551s0004.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-143ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cheng MC,Hsieh EJ,Chen JH,Chen HY,Lin TP
    CORRECTION. Arabidopsis RGLG2, Functioning as a RING E3 Ligase, Interacts with AtERF53 and Negatively Regulates the Plant Drought Stress Response.
    Plant Physiol., 2016. 170(2): p. 1162-3
    [PMID:26826724]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]