PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.8436s0001.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

GeBP

Protein Properties

Length: 319aa MW: 35875.1 Da PI: 6.1121

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.8436s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	107.9	7.3e-34	72	168	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 lf r+w+eeDe+v+L+Gl+d++aktg +++ d+dafy+f+ si +k+ k+q+++Kir+LK +f + +++++g++p+f++++d+++f++ Cagra.8436s0001.1.p 72 LFTRIWNEEDELVVLKGLVDYRAKTGFQSKIDWDAFYRFLAVSIVSKYAKDQVLSKIRKLKSRFLVHLERINQGSDPKFTRASDSEAFGF 161 699************************************************************************************* PP DUF573 92 skkiWgs 98 s+++Wg+ Cagra.8436s0001.1.p 162 SMMLWGQ 168 ***96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.0E-24	73	167	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MVSPKHLEFS SSGGAADDSD DTFSRQKSPV SPHSSKRAAS VAEEETKQKK KHKMKKKIKK 60 KTTTTTQLGS PLFTRIWNEE DELVVLKGLV DYRAKTGFQS KIDWDAFYRF LAVSIVSKYA 120 KDQVLSKIRK LKSRFLVHLE RINQGSDPKF TRASDSEAFG FSMMLWGQNE ANDDGMDKEQ 180 EEPLNENGAP DNNGAARVEQ QSENGEEMLK ENEEVANTEP LNENGAVKVT ENGTAAAKES 240 HDVDDDDELY AVRDAFETVM SQGLSDYQKK LQLKKLMNIG NGKRRELSDE WKALCVEERR 300 LNIKKLRFSA KLAEAANE*

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein, which specifically recognizes the GL1 enhancer sequence (PubMed:12535344). May be involved in leaf initiation (PubMed:12535344). May play redundant roles with GPL1 and GPL2 in cytokinin responses by regulating the transcript levels of type-A ARR response genes (PubMed:18162594). Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). May play a role in plant defense (PubMed:29192025). {ECO:0000269\|PubMed:12535344, ECO:0000269\|PubMed:21875893, ECO:0000269\|PubMed:29192025, ECO:0000305\|PubMed:18162594}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.8436s0001.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by KNAT1. Not regulated by gibberellins. {ECO:0000269\|PubMed:12535344}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006295898.1	0.0	GLABROUS1 enhancer-binding protein
Swissprot	Q9ASZ1	1e-127	STKLO_ARATH; GLABROUS1 enhancer-binding protein
TrEMBL	R0G0S3	0.0	R0G0S3_9BRAS; Uncharacterized protein
STRING	Cagra.8436s0001.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6117	17	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00270.1	1e-121	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Cagra.8436s0001.1.p

Publications ? help Back to Top
Nietzsche M,Schießl I,Börnke F The complex becomes more complex: protein-protein interactions of SnRK1 with DUF581 family proteins provide a framework for cell- and stimulus type-specific SnRK1 signaling in plants. Front Plant Sci, 2014. 5: p. 54 [PMID:24600465] Nietzsche M, et al. STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1. Plant Physiol., 2018. 176(2): p. 1773-1792 [PMID:29192025]