PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.8367s0003.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

NAC

Protein Properties

Length: 379aa MW: 43270.4 Da PI: 7.0455

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.8367s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.2	2.3e-51	5	132	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 l pGfrFhPtdeelv++yLk+kve+++l++ + i+++diyk++PwdLpk + ++kewyf+++rd+ky++++r+nr+t +g+Wkatg+d+ Cagra.8367s0003.1.p 5 LLPGFRFHPTDEELVSFYLKRKVEDRPLSI-KLITQLDIYKYDPWDLPKFAMMGDKEWYFYCPRDRKYRNSTRPNRVTGAGFWKATGTDR 93 579*************************.89***********7666799******************************* PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++s+ +++ +gl+k+Lv+y+g+a kg ktdW+mhe+rl Cagra.8367s0003.1.p 94 PIYSSdGSKFIGLRKSLVYYSGKAAKGIKTDWMMHEFRL 132 956667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.19E-58	4	160	IPR003441	NAC domain
PROSITE profile	PS51005	57.226	5	160	IPR003441	NAC domain
Pfam	PF02365	3.6E-25	7	132	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MEDVLLPGFR FHPTDEELVS FYLKRKVEDR PLSIKLITQL DIYKYDPWDL PKFAMMGDKE 60 WYFYCPRDRK YRNSTRPNRV TGAGFWKATG TDRPIYSSDG SKFIGLRKSL VYYSGKAAKG 120 IKTDWMMHEF RLPSTSSHTL GDTHHVSSND SWAICRILKK INTTAFRAIS HSFVSSLPQD 180 ESTHIKPYEK PSNTSQISSD KILQNSSCFK FYNEDMNVTQ PSSCFDHKEA TKTSTCTTTS 240 PFSYLDFSSS DSPGSRLDQQ HLRNLLLFPQ ETQPPQFPKF ITNYMISSTD SSFLEEYTNH 300 IGDLTSSVLA QEQCPALVSL PQEHHHETRF EENILSNTNP DHHALHHLPS SNVGDQKHHS 360 MLLDNYYSSL SASFSITG*

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MEDVLLPGFR FHPTDEELVS FYLKRKVEDR PLSIKLITQL DIYKYDPWDL PKFAMMGDKE  60
WYFYCPRDRK YRNSTRPNRV TGAGFWKATG TDRPIYSSDG SKFIGLRKSL VYYSGKAAKG  120
IKTDWMMHEF RLPSTSSHTL GDTHHVSSND SWAICRILKK INTTAFRAIS HSFVSSLPQD  180
ESTHIKPYEK PSNTSQISSD KILQNSSCFK FYNEDMNVTQ PSSCFDHKEA TKTSTCTTTS  240
PFSYLDFSSS DSPGSRLDQQ HLRNLLLFPQ ETQPPQFPKF ITNYMISSTD SSFLEEYTNH  300
IGDLTSSVLA QEQCPALVSL PQEHHHETRF EENILSNTNP DHHALHHLPS SNVGDQKHHS  360
MLLDNYYSSL SASFSITG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-54	5	160	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-54	5	160	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-54	5	160	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-54	5	160	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-54	5	160	20	168	NAC domain-containing protein 19
3swm_B	1e-54	5	160	20	168	NAC domain-containing protein 19
3swm_C	1e-54	5	160	20	168	NAC domain-containing protein 19
3swm_D	1e-54	5	160	20	168	NAC domain-containing protein 19
3swp_A	1e-54	5	160	20	168	NAC domain-containing protein 19
3swp_B	1e-54	5	160	20	168	NAC domain-containing protein 19
3swp_C	1e-54	5	160	20	168	NAC domain-containing protein 19
3swp_D	1e-54	5	160	20	168	NAC domain-containing protein 19
4dul_A	1e-54	5	160	17	165	NAC domain-containing protein 19
4dul_B	1e-54	5	160	17	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.8367s0003.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189353	4e-89	AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006301116.1	0.0	protein FEZ
Swissprot	Q9ZVH0	1e-145	FEZ_ARATH; Protein FEZ
TrEMBL	R0HW28	0.0	R0HW28_9BRAS; Uncharacterized protein
STRING	Cagra.8367s0003.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-144	NAC family protein

Link Out ? help Back to Top
Phytozome	Cagra.8367s0003.1.p

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]