PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.8164s0008.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GeBP
Protein Properties Length: 384aa    MW: 41493.2 Da    PI: 5.0833
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.8164s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF5731361.2e-42155247297
               DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                          +fqrlw+e+Dei++LqG+idfka+tgksp++d++afy+f+kksisf+vsk+q+++Kir+L+kK++ k k+   g epsfsk+hdqk++el
  Cagra.8164s0008.1.p 155 AFQRLWTEDDEIAVLQGMIDFKADTGKSPYEDTNAFYDFIKKSISFEVSKNQFMDKIRSLRKKYTAKGKT---GVEPSFSKAHDQKSYEL 241
                          69***************************************************************99888...***************** PP

               DUF573  92 skkiWg 97 
                          sk iWg
  Cagra.8164s0008.1.p 242 SKFIWG 247
                          *****9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.9E-34156247IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MTKKLNPLED PPTASSSEDE DVETSEAGEA SDDSSSSEED ESSKIPIKSL ASKSTAAAAV  60
AAPSKPATAA DSDSGSETET DSDSESTNPP NSGSGKTISV NLKKKEDSTS YAALALPAVK  120
SGAKRPASEA AASAKRVKVV TSGGGGEEES VKKPAFQRLW TEDDEIAVLQ GMIDFKADTG  180
KSPYEDTNAF YDFIKKSISF EVSKNQFMDK IRSLRKKYTA KGKTGVEPSF SKAHDQKSYE  240
LSKFIWGPDG FALESNIKSN GVSRKSQSKS KKKIDSVKQE LVFAGSSPNG KKVEDGDDED  300
VIVRGGDSRK PDWFVNSALF RMITTLGVDE YTLKYKWSLV PDQTKKIVEG KFKKLQDMEL  360
DFLLEKADLL HDLTAMIIEA SKK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.8164s0008.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545770.0AC254577.1 Capsella rubella clone JGIBSIA-13B13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302389.10.0probable transcription factor At1g61730
SwissprotQ9SYA91e-150STKLD_ARATH; Probable transcription factor At1g61730
TrEMBLR0GHD80.0R0GHD8_9BRAS; Uncharacterized protein
STRINGCagra.8164s0008.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.11e-101DNA-binding storekeeper protein-related transcriptional regulator