PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.8005s0016.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 336aa    MW: 38203.9 Da    PI: 8.0275
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.8005s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.21.3e-31197251155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k+r+rWt++LHe+Fve+v+ LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+
  Cagra.8005s0016.1.p 197 KTRIRWTQDLHEKFVECVNCLGGADKATPKAILKLMDSDGLTIFHVKSHLQKYRI 251
                          68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.068194254IPR017930Myb domain
SuperFamilySSF466891.22E-17194251IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-28196252IPR009057Homeodomain-like
TIGRFAMsTIGR015576.2E-23197252IPR006447Myb domain, plants
PfamPF002492.6E-7201250IPR001005SANT/Myb domain
PfamPF143793.7E-20281328IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MDNINFEFSN ASQGSQLQSQ PQPQPPQPFN LQNLNNMIQY NQPSSPWTRA ETFSEFPPYD  60
CTANQSFPLQ CSSSKPYPSS FHPYHHLSPD PTSLDQTLSM VPMQPLPDQY LKPSLYQRSC  120
ANDFAAANNA SSASYSLSFE ASQDPQELCR RTYSNSNVTH LNFSSSHQQL KQTPSKFSSH  180
TSFSTHGGSV APNCVNKTRI RWTQDLHEKF VECVNCLGGA DKATPKAILK LMDSDGLTIF  240
HVKSHLQKYR IAKYMPETQE GKFEKRACGK ELSQLDTKTG VQIKEALQLQ LDVQRHLHEQ  300
LEIQRNLQLR IEEQGKQLKI MMEQQQKTKE SLMKTP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-23197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-23197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-23197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-23197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-23197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-23197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-23197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-23197254259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.8005s0016.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2266440.0AK226644.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-39-G11.
GenBankBT0126580.0BT012658.1 Arabidopsis thaliana At5g06800 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289659.10.0myb family transcription factor PHL5
SwissprotQ0WVU30.0PHL5_ARATH; Myb family transcription factor PHL5
TrEMBLR0FJG70.0R0FJG7_9BRAS; Uncharacterized protein
STRINGCagra.8005s0016.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54762748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.11e-166G2-like family protein