PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.7865s0016.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | LSD | ||||||||
Protein Properties | Length: 158aa MW: 16182.8 Da PI: 7.9227 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 46.3 | 6.7e-15 | 38 | 62 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP+GA+sV+Ca+C++V Cagra.7865s0016.1.p 38 CSGCRNLLMYPAGATSVCCAVCNAV 62 ************************9 PP | |||||||
2 | zf-LSD1 | 46.6 | 5.5e-15 | 77 | 101 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV Cagra.7865s0016.1.p 77 CGGCHTLLMYIRGATSVQCSCCHTV 101 ************************9 PP | |||||||
3 | zf-LSD1 | 41.7 | 1.9e-13 | 115 | 139 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V Cagra.7865s0016.1.p 115 CGNCRMLLMYQYGARSVKCAVCNFV 139 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 3.1E-14 | 35 | 65 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 6.0E-12 | 38 | 62 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.0E-14 | 74 | 103 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.5E-12 | 77 | 101 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 4.5E-12 | 112 | 142 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.2E-12 | 115 | 139 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MPVPLAPYPT PPAPVMAPPY APPPTHGGST SGQSQLVCSG CRNLLMYPAG ATSVCCAVCN 60 AVTAVPPPGT EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLALEANQV AHVNCGNCRM 120 LLMYQYGARS VKCAVCNFVT SVVGGSSSTT PDVKFNN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.7865s0016.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY057675 | 1e-140 | AY057675.1 Arabidopsis thaliana At1g32540/T9G5_1 mRNA, complete cds. | |||
GenBank | AY116951 | 1e-140 | AY116951.1 Arabidopsis thaliana At1g32540/T9G5_1 mRNA, complete cds. | |||
GenBank | AY349618 | 1e-140 | AY349618.1 Arabidopsis thaliana LSD1-like (LOL1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023633227.1 | 1e-109 | protein LOL1 isoform X1 | ||||
Swissprot | Q93ZB1 | 1e-82 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | R0IDJ3 | 1e-107 | R0IDJ3_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.7865s0016.1.p | 1e-108 | (Capsella grandiflora) | ||||
STRING | XP_006303377.1 | 1e-108 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7293 | 26 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 4e-63 | lsd one like 1 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.7865s0016.1.p |
Publications ? help Back to Top | |||
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