PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.7254s0011.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 382aa    MW: 43101.4 Da    PI: 4.7163
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.7254s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.42.2e-33241162102
                          HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
         HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                          Fl+k ye+++d++++++isws +  nsfv+ld++ f+ ++LpkyFkhsnf+SF+RQLn+YgFkkv+ ++         weF+++ F kg+
  Cagra.7254s0011.1.p  24 FLRKCYEMVDDSSTDSIISWSkSADNSFVILDTTVFSVQLLPKYFKHSNFSSFIRQLNIYGFKKVDADR---------WEFANDGFVKGQ 104
                          9********************7777*****************************************999.........************ PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  91 kellekikrkks 102
                          k+ll+++ r+k+
  Cagra.7254s0011.1.p 105 KDLLKNVIRRKN 116
                          ******999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-3415109IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.05E-3119114IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-5220114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-182447IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.0E-2824114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-186375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-187688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MVKSAADGGG GDGSSSSSSS VAPFLRKCYE MVDDSSTDSI ISWSKSADNS FVILDTTVFS  60
VQLLPKYFKH SNFSSFIRQL NIYGFKKVDA DRWEFANDGF VKGQKDLLKN VIRRKNIQSN  120
DQSKQESKSA TDAQEKPEKS GLWKEVDILK GDKKALAQEL IKVRQYQEIT DTKMVHLKDR  180
VHGMEESQQE MLSFLVMVMK NPSLLVQLLQ PKEKNSWRKA GEGATIVEEV TDEGESNSYG  240
LPLVTYQPPA DNGTSKSSSN DLNDFLRNAD MMKFCLDENH VPLIIPDLYD DGAWEKLLLL  300
SPSRKKTKKQ ENNVKKGKDD PTLEEEEEED GTMESDKSRM LELISKEMER SDDFEYGQLT  360
PERSRNLDIL TEQMSVLASN E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-231411419129Heat shock factor protein 1
5d5v_B7e-231411419129Heat shock factor protein 1
5d5v_D7e-231411419129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.7254s0011.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2518660.0AJ251866.1 Arabidopsis thaliana mRNA for heat shock factor 5 (hsf5 gene).
GenBankAY0943960.0AY094396.1 Arabidopsis thaliana At1g67970/T23K23_18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302467.20.0LOW QUALITY PROTEIN: heat stress transcription factor A-8
SwissprotQ9S7U50.0HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLR0IB460.0R0IB46_9BRAS; Uncharacterized protein
STRINGCagra.7254s0011.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70452637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.10.0heat shock transcription factor A8