PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.7149s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | GATA | ||||||||
Protein Properties | Length: 114aa MW: 12591.5 Da PI: 7.5018 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 28.3 | 2.5e-09 | 95 | 114 | 1 | 20 |
GATA 1 CsnCgttkTplWRrgpdgnk 20 C++C tt+TplWR+gp g+k Cagra.7149s0001.1.p 95 CASCDTTSTPLWRNGPKGPK 114 ******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 10.251 | 89 | 114 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.85E-5 | 89 | 113 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.0E-7 | 93 | 112 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 1.2E-6 | 95 | 114 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
MMGYQTNPNF SMFFSSENDD QNQYNYDHYN DLSSSTSVDC TLSLGTPSTR LDDHRRFSNA 60 GSNNISGDFY FHGGNAKTTS YKKGGGGDHS LPRRCASCDT TSTPLWRNGP KGPK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00110 | ampDAP | Transfer from AT2G18380 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.7149s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC006439 | 1e-114 | AC006439.4 Arabidopsis thaliana chromosome 2 clone T30D6 map mi39, complete sequence. | |||
GenBank | CP002685 | 1e-114 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006296733.2 | 7e-78 | GATA transcription factor 20 | ||||
Swissprot | Q9ZPX0 | 1e-66 | GAT20_ARATH; GATA transcription factor 20 | ||||
TrEMBL | R0G2T8 | 3e-76 | R0G2T8_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | Cagra.7149s0001.1.p | 2e-79 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6159 | 17 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18380.1 | 4e-69 | GATA transcription factor 20 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.7149s0001.1.p |
Publications ? help Back to Top | |||
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