PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.7053s0009.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 415aa    MW: 46556.2 Da    PI: 6.9088
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.7053s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.79.8e-3286139255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          prlrWtpeLH +F++ave+LGG+++AtPk +l+lm+vkgL+++hvkSHLQ+YR+
  Cagra.7053s0009.1.p  86 PRLRWTPELHICFLQAVERLGGPDRATPKLVLQLMNVKGLSIAHVKSHLQMYRS 139
                          8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.11782142IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-3082140IPR009057Homeodomain-like
SuperFamilySSF466895.02E-1683141IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-2486141IPR006447Myb domain, plants
PfamPF002492.3E-987138IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MRSSSKSSEN SKTCLSNNFK ATTNIEEDKD EEEDEEGEED EEERSGDQSP SSNSYVEESG  60
SHQHHHHDQI KKNGGSVRPY NRSKTPRLRW TPELHICFLQ AVERLGGPDR ATPKLVLQLM  120
NVKGLSIAHV KSHLQMYRSK KTDDPNQGDQ GFSFEHGAGY TYNLSQLPML QSFDQRPSSS  180
LGYGGGSWTD HRRQIYRSPW RGLTARDNTR TRQTLFSPRP GERVHGVSNS ILDDKNKTIS  240
FRINSHEAAH ENNGVAEVVP RIHRSILEGM KTFNKSWGQS LSSNLNHSTA TRPQDHIATT  300
LNSYQWENSR VAEGSENVLK RKRLLSSDDC NKSDQDLDLS LSLKVPRTHD NLGECLLEDE  360
EKENGDQQDS LQGLSLSLSS SGISKLGPTI RKEDRTDHKK GKITVLASPL DLTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-1787141357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-1787141357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-1787141357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-1787141357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00301DAPTransfer from AT2G40260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.7053s0009.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545950.0AC254595.1 Capsella rubella clone CAP16-M18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294294.10.0putative two-component response regulator-like APRR6
TrEMBLR0FW670.0R0FW67_9BRAS; Uncharacterized protein
STRINGCagra.7053s0009.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93592136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.10.0G2-like family protein