PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.6845s0054.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family LBD
Protein Properties Length: 232aa    MW: 25554.3 Da    PI: 9.828
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.6845s0054.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.12.7e-284107199
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C+++C ++  +     p++q++++ +++k++G++ +++l++a p++ r+++++sl+ eA+ r+ +P+yG+vg+++++++
  Cagra.6845s0054.1.p   4 SCNGCRVLRKGCSENCSIRSSLawiesPESQANATVFLAKFYGRTGLVNLVNAGPDHLRPAIFRSLLHEACGRVMNPIYGSVGLLWSGSW 93 
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaelallke 99 
                          ql+q++++++l +e
  Cagra.6845s0054.1.p  94 QLCQAAVDAVLKGE 107
                          ******99988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.7463109IPR004883Lateral organ boundaries, LOB
PfamPF031955.9E-224102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRSSLAWIES PESQANATVF LAKFYGRTGL VNLVNAGPDH  60
LRPAIFRSLL HEACGRVMNP IYGSVGLLWS GSWQLCQAAV DAVLKGEAIT PIATDTAAKG  120
QGPPIKVYDI RHISKKENAA ANGSSRHRKR YKTRRVKPKR EEKANEASHD SSLSHQSEDE  180
TANFPIELEL KLGIEPVLSH VVVPVKKRRM GVFRTCHLEK YTCNEDVGLS K*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153160RRVKPKRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.6845s0054.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006279210.11e-169LOB domain-containing protein 41
SwissprotQ9M8861e-105LBD41_ARATH; LOB domain-containing protein 41
TrEMBLR0GLP31e-167R0GLP3_9BRAS; Uncharacterized protein
STRINGCagra.6845s0054.1.p1e-172(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77212741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-107LOB domain-containing protein 41