PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.6594s0025.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB_related | ||||||||
Protein Properties | Length: 231aa MW: 25432.8 Da PI: 9.886 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.6 | 1.6e-14 | 80 | 124 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky Cagra.6594s0025.1.p 80 RENWTEQEHDKFLEALHLFDRD-WKKIEAFVG-SKTVVQIRSHAQKY 124 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.38E-17 | 74 | 130 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.6 | 75 | 129 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-7 | 77 | 130 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.5E-18 | 78 | 127 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.3E-11 | 79 | 127 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-12 | 80 | 124 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.36E-9 | 82 | 125 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
VPKILSQSES ENAKRIAIFE SSMVSVNPRP KGFPFVDPVD MSLPASSEGF GSAPVTGRTV 60 SFSEDPATKI RKPYTIKKSR ENWTEQEHDK FLEALHLFDR DWKKIEAFVG SKTVVQIRSH 120 AQKYFLKVQK SGANEHLPPP RPKRKAIHPY PQKAPKNVAF TSHVIGSLPS SSSTPLLEPG 180 YLYSSDPQSL LGNQAVCASS SSSWNHESTN LPKPVIEVEE PGVSATALPK N |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.6594s0025.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006288162.2 | 1e-151 | protein REVEILLE 5 isoform X1 | ||||
Swissprot | C0SVG5 | 1e-126 | RVE5_ARATH; Protein REVEILLE 5 | ||||
TrEMBL | R0GVZ1 | 1e-165 | R0GVZ1_9BRAS; Uncharacterized protein (Fragment) | ||||
TrEMBL | R0H856 | 1e-165 | R0H856_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | Cagra.6594s0025.1.p | 1e-168 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1290 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01280.2 | 1e-116 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.6594s0025.1.p |
Publications ? help Back to Top | |||
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