PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.6372s0006.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 324aa    MW: 36407.2 Da    PI: 7.0705
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.6372s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.61.5e-50191461128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          lppGfrFhP+d+elv++yL ++++++ ++    v+ +vd++k+ePwd+pk++  + k+wyf+s+rd+kyatg r+nrat++gyWkatgkd
  Cagra.6372s0006.1.p  19 LPPGFRFHPKDDELVCDYLMRRASSSLHHKPPlVLIQVDLNKCEPWDIPKMACVGGKDWYFYSQRDRKYATGLRTNRATATGYWKATGKD 108
                          79********************998875553416999************8777799********************************** PP

                  NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++l+ kg+lvg++ktLvfy+grap+g+ktdWvmhe+rl
  Cagra.6372s0006.1.p 109 RAILR-KGKLVGMRKTLVFYQGRAPRGRKTDWVMHEFRL 146
                          ****9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-607173IPR003441NAC domain
PROSITE profilePS5100556.03819172IPR003441NAC domain
PfamPF023652.9E-2620146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
METEEEMKES SISMVEAKLP PGFRFHPKDD ELVCDYLMRR ASSSLHHKPP LVLIQVDLNK  60
CEPWDIPKMA CVGGKDWYFY SQRDRKYATG LRTNRATATG YWKATGKDRA ILRKGKLVGM  120
RKTLVFYQGR APRGRKTDWV MHEFRLHGSY HPLDHSLTSP KEDWVLCRVF HKNTEGLICR  180
DNTGSCFDET ASASLPPLMD PYINFDQEPS SYLSDDQHFI INEHVPCFSN LSQNHTLNLT  240
SSVSELKTPC KNPNPLFTSA SSPATLTGLD SFSSSDQMVL RALLSQLTKI DGSLGDKESQ  300
NYGEGSSESL LTDIGIPSTA WKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-5271753171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.6372s0006.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1980540.0AF198054.1 Arabidopsis thaliana NAC1 (NAC1) mRNA, complete cds.
GenBankAY0859960.0AY085996.1 Arabidopsis thaliana clone 205648 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006304448.10.0NAC domain-containing protein 21/22
SwissprotQ84TE60.0NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLR0GNI10.0R0GNI1_9BRAS; Uncharacterized protein
STRINGCagra.6372s0006.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36192859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.20.0NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]