PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.6263s0002.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GRAS
Protein Properties Length: 407aa    MW: 45046.1 Da    PI: 6.0655
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.6263s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS379.15.3e-116424002373
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPi 90 
                           +lLl+cAe vs+++l +a++lL+++se++sp g++ +R++ayf++AL++r+ +   s+ + +l+ ++ s ++s + ++al++f+ vsP+
  Cagra.6263s0002.1.p  42 LSLLLQCAEYVSTDHLPEASTLLSEISEICSPFGSSPERVVAYFAQALQTRVISsYLSGACVSLSEKPLSVSQSRKIFSALQTFNSVSPL 131
                          689************************************************999788999999*******99****************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                          +kfsh+taNqaI +a++ge+ vHiiD+d++qGlQWpaL++ LasRp++  s+RiTg+gs    s++ l +tg+rLa+fA++l++pfef++
  Cagra.6263s0002.1.p 132 IKFSHFTANQAIFQALDGEDSVHIIDLDVMQGLQWPALFHILASRPRKLRSIRITGFGS----SSDLLASTGRRLADFASSLNLPFEFHP 217
                          ***********************************************************....9************************** PP

                 GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfd 269
                          +  k  + +++++L +++gEa++V+++   hrl+d +++  +    +L+++++l+P++++vveqe+++ +++sFl rf+eal+yysalfd
  Cagra.6263s0002.1.p 218 IEGKIGNLIDPSQLGTRQGEAVVVHWMQ--HRLYDVTGNDLE----TLEILRRLKPNLITVVEQELSYdDGGSFLGRFVEALHYYSALFD 301
                          988888899******************9..****88888777....**********************8999****************** PP

                 GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                          +l  +l++es er +vE+ +l+ ei+n+va+ g + r       kW+e l+++GF+pv+l+ + a+qa lll + +++gy++ ee+g+l 
  Cagra.6263s0002.1.p 302 ALGDGLSEESGERFTVEQLVLATEIRNIVAHGGGR-RR----RVKWKEELNRVGFRPVSLRGNPATQAGLLLGMLPWNGYTLVEENGTLR 386
                          ********************************997.33....357********************************************* PP

                 GRAS 360 lgWkdrpLvsvSaW 373
                          lgWkd +L+++SaW
  Cagra.6263s0002.1.p 387 LGWKDLSLLTASAW 400
                          ************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.03715381IPR005202Transcription factor GRAS
PfamPF035141.8E-11342400IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MTSKRFDRDF QPSDDPSVAK RRIEEFSDET LRSGGAAAIK LLSLLLQCAE YVSTDHLPEA  60
STLLSEISEI CSPFGSSPER VVAYFAQALQ TRVISSYLSG ACVSLSEKPL SVSQSRKIFS  120
ALQTFNSVSP LIKFSHFTAN QAIFQALDGE DSVHIIDLDV MQGLQWPALF HILASRPRKL  180
RSIRITGFGS SSDLLASTGR RLADFASSLN LPFEFHPIEG KIGNLIDPSQ LGTRQGEAVV  240
VHWMQHRLYD VTGNDLETLE ILRRLKPNLI TVVEQELSYD DGGSFLGRFV EALHYYSALF  300
DALGDGLSEE SGERFTVEQL VLATEIRNIV AHGGGRRRRV KWKEELNRVG FRPVSLRGNP  360
ATQAGLLLGM LPWNGYTLVE ENGTLRLGWK DLSLLTASAW ISQPFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-1454740024377Protein SCARECROW
5b3h_D1e-1454740024377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.6263s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0170670.0AB017067.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJC20.
GenBankBT0297600.0BT029760.1 Arabidopsis thaliana At5g41920 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282634.10.0scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLR0F1R50.0R0F1R5_9BRAS; Uncharacterized protein
STRINGCagra.6263s0002.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125122631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]