PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.6170s0013.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | AP2 | ||||||||
Protein Properties | Length: 576aa MW: 63069.9 Da PI: 6.6953 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.5 | 1.2e-11 | 208 | 264 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ngkr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++ g++ k + g ++ +e+Aa+a++ a++k++g Cagra.6170s0013.1.p 208 SIYRGVTRHRWTGRYEAHLWDnSCKrEGQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 264 57*******************88885445536655.779999**************98 PP | |||||||
2 | AP2 | 51.2 | 3.2e-16 | 307 | 358 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+fgt eeAa+a++ a+ k++g Cagra.6170s0013.1.p 307 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 358 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.54E-18 | 208 | 274 | No hit | No description |
SuperFamily | SSF54171 | 6.47E-15 | 208 | 274 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.6E-9 | 208 | 264 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.319 | 209 | 272 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-12 | 209 | 273 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.2E-23 | 209 | 278 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-6 | 210 | 221 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.25E-24 | 307 | 368 | No hit | No description |
Pfam | PF00847 | 4.0E-11 | 307 | 358 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-17 | 307 | 368 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-17 | 308 | 367 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.0E-33 | 308 | 372 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.742 | 308 | 366 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-6 | 348 | 368 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 576 aa Download sequence Send to blast |
MNSMNNWLGF SLSPHDQNHH RSTDVDSSTT TTAVDVASEY CFDLAAASDV SSAVQTSFPS 60 PFGVVLEAFT RDNNSHSRDW DINSGACNTI HNNEQNGPKL ENFLGRTTTI YNTANESVGD 120 GSGGLGGGDG GSLGLSMIKS WLSNQPVANV NHQDNGNGAR GLSLSMNSST TCDSKNYNNN 180 DVVKEKTIVD VVEATPKKTI ESFGQRTSIY RGVTRHRWTG RYEAHLWDNS CKREGQTRKG 240 RQGGYDKEEK AARAYDLAAL KYWGTTTTTN FPMSSYEKEV EEMKHMTRQE YVASLRRKSS 300 GFSRGASIYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFG TQEEAAEAYD IAAIKFRGLS 360 AVTNFDMSRY NVKAILESPS LPIGSSAKRL KEVNSPVPSM VISNNVSESA NNVSGWQNAA 420 FQHHQGMDLS LLQQQQERYV GYYNGGNLSS ESTRVCFKQG EEQQRFLSNS MDHHSSTSDD 480 SVTVCGNAVG YGGYQGFAIP VGTSVNCDAY TAAEIAYNAR SHYYYAQQQQ QQQQIQQSPE 540 GDFPVAVLNN VGSNMYFHGE GGGEGASTFS VWNGT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00610 | ChIP-seq | Transfer from AT5G17430 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.6170s0013.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY585684 | 0.0 | AY585684.1 Arabidopsis thaliana clone at5g17430 AP2/EREBP transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023636878.1 | 0.0 | AP2-like ethylene-responsive transcription factor BBM | ||||
Swissprot | Q6PQQ4 | 0.0 | BBM_ARATH; AP2-like ethylene-responsive transcription factor BBM | ||||
TrEMBL | R0GZ17 | 0.0 | R0GZ17_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.6170s0013.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8655 | 27 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17430.1 | 0.0 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.6170s0013.1.p |