PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.6160s0032.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | Nin-like | ||||||||
Protein Properties | Length: 845aa MW: 94040.8 Da PI: 5.2523 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 91.9 | 4.9e-29 | 556 | 606 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ Cagra.6160s0032.1.p 556 DKTITLDVLRQYFAGSLKDAAKNIGVCPTTLKRICRQHGIQRWPSRKIKKV 606 689**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.245 | 543 | 626 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.3E-25 | 558 | 606 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 1.86E-22 | 735 | 832 | No hit | No description |
SMART | SM00666 | 7.7E-26 | 744 | 827 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 28.503 | 744 | 827 | IPR000270 | PB1 domain |
CDD | cd06407 | 2.42E-41 | 745 | 825 | No hit | No description |
Pfam | PF00564 | 1.1E-19 | 745 | 826 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 8.3E-21 | 745 | 824 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 845 aa Download sequence Send to blast |
MEDSFLQTEN AVMDSEFMDG LLLDGCWLET TDGSEFLNVA PSTSSVSPFD PSSFMWSPTQ 60 DTSAICTSGV VSTMYGQDCV ERSSLDDCQW NKRWWIGPGG GGSVTERLVQ AVEHIKDYTT 120 ERGSLIQLWV PVNRGGKRVL TTKEQPFSHD PMCQRLANYR EISVNYHFSA EQDDSKALAG 180 LPGRVFLGKL PEWTPDVRFF KSEEYPRVHH AQDCGVRGTL AIPVFEQGSK ICLGVIEVVM 240 TTEMVKLRPE LESICKALQA VDLRSTELPI PPSLKGCDLS YKAALPEIRN LLRCACETHK 300 LPLAQTWVSC LQQNKSGCRH NDENYIHCVS TIEDACYVGD PTVREFHEAC SEHHLLKGQG 360 VAGQAFMTNG PCFSSDVSNY KKSEYPLSHH ANMYGLHGAV AIRLRCIHTG SADFVLEFFL 420 PKDCDDLEEQ RKMLNALSTI MAHVPRSLRT VTDKELEEES VVIEREDIVT PKIENASELQ 480 HLHDNSPWSA SLEEIQSNNT SNSQNLGLVF DGDKPNDGFG LKRGFDYTMD SNVNESGTFS 540 SGSFSMMAEK KRTKADKTIT LDVLRQYFAG SLKDAAKNIG VCPTTLKRIC RQHGIQRWPS 600 RKIKKVGHSL QKIQRVIDSV QGVSGPLPIG SFYASFPNLV SQSQEPSQQA KTSPPPPPPV 660 QLAKSPVSSY SQSSNSSQCC SSETQLNSGG TTDPASADVG GLLKKTSSEI ELQSSSLDET 720 ILTLSSLENV PQGTNLISSQ DDDFLRIKVS YGEEKIRLRM RNSRKLTDLL WEIGKRFSIE 780 DMSRYDLKYL DEDNEWVLLT CDEDVEECVD VCRTTPSQTI KLLLQVSSHH FPERSSATEY 840 SLWH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00154 | DAP | Transfer from AT1G20640 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.6160s0032.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY091015 | 0.0 | AY091015.1 Arabidopsis thaliana putative nodule inception protein (At1g20640) mRNA, complete cds. | |||
GenBank | AY117237 | 0.0 | AY117237.1 Arabidopsis thaliana putative nodule inception protein (At1g20640) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006306759.1 | 0.0 | protein NLP4 | ||||
Swissprot | Q9LE38 | 0.0 | NLP4_ARATH; Protein NLP4 | ||||
TrEMBL | R0GUM3 | 0.0 | R0GUM3_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.6160s0032.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3461 | 26 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20640.2 | 0.0 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.6160s0032.1.p |