PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.5789s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 149aa    MW: 16098.7 Da    PI: 5.6555
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.5789s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.11.9e-081232447
                         HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqky 47
                         W++Ia +++ gRt++++k++w+++
  Cagra.5789s0001.1.p  1 WSLIAGRLP-GRTDNEIKNYWNTH 23
                         *********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001677.75E-7124No hitNo description
SuperFamilySSF466893.75E-7137IPR009057Homeodomain-like
PfamPF002493.9E-6123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-12141IPR009057Homeodomain-like
PROSITE profilePS5129417.06128IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
WSLIAGRLPG RTDNEIKNYW NTHIKRKLLS HGIDPQTHRP INDTKTTPSQ IVIVDPVQND  60
AVEYSFSNLA VKPENSSDNG ASTSGTTTDE DLRQNGECYN SDNSGRIEIN LDLTLGFGSG  120
SGRVVGAGSS ADSKPWRDQV MAARLSLL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.5789s0001.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288570.11e-103transcription repressor MYB6
SwissprotQ388517e-87MYB6_ARATH; Transcription repressor MYB6
TrEMBLR0HCS41e-101R0HCS4_9BRAS; Uncharacterized protein
STRINGCagra.5789s0001.1.p1e-105(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.14e-77myb domain protein 6