PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.5742s0020.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 322aa    MW: 35774.3 Da    PI: 10.3357
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.5742s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like51.13e-16256309154
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                          +pr++Wt+ L + F +av++LGG  +At  ++ +lm+ +gLt+e+v SHL   R
  Cagra.5742s0020.1.p 256 RPRVVWTERLQQVFDSAVARLGGLRNATGNRVYNLMHTEGLTREQVTSHLRVMR 309
                          59************************************************8777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.56E-8254312IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-15255311IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-16257311IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MANNKKSIDD FLDELDAIES LAQKLAKIDE HLKKLYEENK ENDEKNIQVW TRRSTNEAIA  60
QILAIRQNLL SPPPSTSLQP PASSSREFNF FPTTSDSYPL RPPHSSDGPR PSKFSSSPSS  120
AFKPFQSYNN PPRSSLALSS SFSSSPSSAF KPFQSYNNPP RSSPALSSSS SSPSQPYKRL  180
RLSNINSAPL SSSPLPSFNP FLLPHPQDSR LPQILQDPLA PPLPNLNPLI FQDPLALPLP  240
NPMPNPIPIP IPIQSRPRVV WTERLQQVFD SAVARLGGLR NATGNRVYNL MHTEGLTREQ  300
VTSHLRVMRN RRRELADDLN S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.5742s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023641331.11e-156uncharacterized protein LOC111831443
STRINGCagra.5742s0020.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2325233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19070.11e-15G2-like family protein