PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.5641s0065.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | G2-like | ||||||||
Protein Properties | Length: 447aa MW: 49471 Da PI: 6.1644 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100 | 1.6e-31 | 236 | 290 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fv+ v +L G+ekAtPk++l+lm+v+gLt++hvkSHLQkYRl Cagra.5641s0065.1.p 236 KPRMRWTPELHESFVNSVIKLEGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 290 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-29 | 233 | 291 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.14E-16 | 235 | 290 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-23 | 236 | 291 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.7E-7 | 238 | 289 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.5E-22 | 326 | 373 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 447 aa Download sequence Send to blast |
MNRHSLVSVA PDKCNEEVGQ SCSSSLSPVH NFLNVHPETR KSPFIRSQSP DSPGQLWPKH 60 SSQSTFSRSS TFCTNLYLSS SSTSETQKHL GNCLPFLPDP SSYSHSASGV ESARSPSIFS 120 EDLGNQYDGN DSGSLVKDFL NLSGDACSDG GFHDFGCSND SFCLSDQMEL QFLSDELELA 180 ITDRAETPTL DEIYETPLAS VNPVTRLSPS QSCVAGAVSI DVVSSHPSPG STANHKPRMR 240 WTPELHESFV NSVIKLEGPE KATPKAVLKL MNVEGLTIYH VKSHLQKYRL AKYMPEKKEE 300 KKNDNSEEKK LAFSNSEADE KRKGAIQLTE ALRMQMEVQK QLHEQLEVQR VLQLRIEEHA 360 KYLEKMLEEQ RKTGRLISSS SPSQTVLSPS DESIENSENL SKTKASSPQP SSSTKNKASE 420 TEGNMCESPL KRRRLENKAE SEDPKR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-23 | 236 | 293 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-23 | 236 | 293 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-23 | 236 | 293 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-23 | 236 | 293 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-23 | 236 | 293 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-23 | 236 | 293 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-23 | 236 | 293 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-23 | 236 | 293 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 430 | 434 | KRRRL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00354 | DAP | Transfer from AT3G13040 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.5641s0065.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY050889 | 0.0 | AY050889.1 Arabidopsis thaliana unknown protein (At3g13040) mRNA, complete cds. | |||
GenBank | AY096674 | 0.0 | AY096674.1 Arabidopsis thaliana unknown protein (At3g13040) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006297672.1 | 0.0 | myb family transcription factor PHL6 | ||||
Swissprot | Q949U2 | 0.0 | PHL6_ARATH; Myb family transcription factor PHL6 | ||||
TrEMBL | R0HYE1 | 0.0 | R0HYE1_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.5641s0065.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6786 | 27 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13040.2 | 0.0 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.5641s0065.1.p |
Publications ? help Back to Top | |||
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