PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.5641s0038.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | G2-like | ||||||||
Protein Properties | Length: 237aa MW: 26988.6 Da PI: 7.6171 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.7 | 6.4e-34 | 23 | 77 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av++LGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl Cagra.5641s0038.1.p 23 KPRLRWTAELHERFVDAVAHLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 77 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.984 | 20 | 80 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-32 | 20 | 78 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.02E-17 | 22 | 78 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-24 | 23 | 78 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.4E-8 | 25 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 6.1E-15 | 124 | 163 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MMQSREEMRD ESSSGLVLTT DPKPRLRWTA ELHERFVDAV AHLGGPDKAT PKTIMRVMGV 60 KGLTLYHLKS HLQKFRLGKQ PHKEHSQNHS INIRDTNRAS MLDLRRNAVF TTSPLIVGRN 120 MNEMQMEVQR RIEEEVEIER QVNQRIEAQG KYMESMLEKA CETQEASLTK DYSTLFFDCT 180 NTCNNTSSLP IPWFEDHFPS SSSMDSSTLV LPNINSNFPL QDSRSSITKG RTVCLG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-19 | 23 | 79 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-19 | 23 | 79 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 3e-19 | 23 | 79 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-19 | 23 | 79 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-19 | 23 | 79 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-19 | 23 | 79 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-19 | 23 | 79 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-19 | 23 | 79 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-19 | 23 | 79 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-19 | 23 | 79 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-19 | 23 | 79 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-19 | 23 | 79 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00351 | DAP | Transfer from AT3G12730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.5641s0038.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY070764 | 0.0 | AY070764.1 Arabidopsis thaliana AT3g12730/MBK21_9 mRNA, complete cds. | |||
GenBank | AY143916 | 0.0 | AY143916.1 Arabidopsis thaliana At3g12730/MBK21_9 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006298455.1 | 1e-178 | myb family transcription factor PHL12 | ||||
Swissprot | Q8VYI2 | 1e-165 | PHLC_ARATH; Myb family transcription factor PHL12 | ||||
TrEMBL | R0I4S5 | 1e-176 | R0I4S5_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.5641s0038.1.p | 1e-178 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13745 | 17 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12730.1 | 1e-145 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.5641s0038.1.p |
Publications ? help Back to Top | |||
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