PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.5641s0032.2.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 524aa    MW: 57432.2 Da    PI: 7.6422
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.5641s0032.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.29.8e-12178201326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          ++ C ++++t tCk+Gd+CkF H+
  Cagra.5641s0032.2.p 178 EKDCTHYMQTRTCKFGDSCKFDHP 201
                          678********************9 PP
2zf-CCCH34.14.6e-11227253127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++ C+++ +t  CkyG+rCkF+H++
  Cagra.5641s0032.2.p 227 PGEPDCPYYIKTQRCKYGSRCKFNHPR 253
                          5789*********************96 PP
3zf-CCCH375.6e-12272296327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C f+++tG Ck+G +CkF+H++
  Cagra.5641s0032.2.p 272 EPMCTFYMKTGKCKFGLTCKFHHPK 296
                          689********************96 PP
4zf-CCCH38.71.7e-12342368127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++ C+f+++tG CkyG++C+++H++
  Cagra.5641s0032.2.p 342 PGEVDCPFYLKTGSCKYGATCRYNHPE 368
                          57899********************96 PP
5zf-CCCH40.25.7e-13423447226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++++C+++++tG+Ck+G+rC+F+H+
  Cagra.5641s0032.2.p 423 GQSECDYYMKTGECKFGERCRFHHP 447
                          7899********************8 PP
6zf-CCCH41.71.9e-13478501427
                          ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                          ++C+++++tGtCk+G++CkF H+p
  Cagra.5641s0032.2.p 478 VNCPYYMKTGTCKFGATCKFDHPP 501
                          68********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.169175203IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-5176202IPR000571Zinc finger, CCCH-type
SMARTSM003560.0018177202IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-9178201IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-5181200IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-5226253IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.652226254IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-7228253IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-6231255IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-6232255IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3269297IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4269296IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6272297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5274295IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-9275296IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-7341368IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.554341369IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-10343368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5345369IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4347368IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-6421448IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.047421449IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-7422451IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-10423447IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-6427448IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.169474502IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-7474501IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-11478501IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5478501IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-5480499IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MAHRQLYSYA LHHQPSYAAA SAVSPAPPPQ PQPPKTALSS LYGSSSVDHY YPDTTFRFLA  60
RDGSEALSNY NSGTLASSSA MYHHLPNTTA SHLGYPQLLQ HQEAAWPPGV EVPAAASAVE  120
PLPPGVKRTS EALYYPTLLG AHNTIGQTEA WYTTDYFTKR PKLESTSHLP IYPQRAGEKD  180
CTHYMQTRTC KFGDSCKFDH PVWVPEGGIP DWKEAPVVPN EEYPERPGEP DCPYYIKTQR  240
CKYGSRCKFN HPRAEAAATV ENQDALPERP SEPMCTFYMK TGKCKFGLTC KFHHPKDIQI  300
PSSSQDNGSS EGLTSDPDAT NNPHVTFTPA LYHNSKGLPV RPGEVDCPFY LKTGSCKYGA  360
TCRYNHPERT AFIPQATGIN YSLLSSNAAN LNLGMVTPAT SLYQTLSQPT LGGLSATYPQ  420
RPGQSECDYY MKTGECKFGE RCRFHHPADR LSATTKQAPQ QPNVKLSLAG YPRREGAVNC  480
PYYMKTGTCK FGATCKFDHP PPGEVMAKTT SEADAAGAAD TTQ*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.5641s0032.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0243570.0AY024357.1 Arabidopsis thaliana floral homeotic protein HUA1 (HUA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297430.10.0zinc finger CCCH domain-containing protein 37 isoform X2
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLR0I1T40.0R0I1T4_9BRAS; Uncharacterized protein
STRINGXP_006297430.10.0(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)