PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.5641s0032.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | C3H | ||||||||
Protein Properties | Length: 527aa MW: 57786.7 Da PI: 7.6422 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.2 | 9.9e-12 | 178 | 201 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C ++++t tCk+Gd+CkF H+ Cagra.5641s0032.1.p 178 EKDCTHYMQTRTCKFGDSCKFDHP 201 678********************9 PP | |||||||
2 | zf-CCCH | 34.1 | 4.6e-11 | 227 | 253 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ +t CkyG+rCkF+H++ Cagra.5641s0032.1.p 227 PGEPDCPYYIKTQRCKYGSRCKFNHPR 253 5789*********************96 PP | |||||||
3 | zf-CCCH | 37 | 5.7e-12 | 272 | 296 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C f+++tG Ck+G +CkF+H++ Cagra.5641s0032.1.p 272 EPMCTFYMKTGKCKFGLTCKFHHPK 296 689********************96 PP | |||||||
4 | zf-CCCH | 38.3 | 2.3e-12 | 346 | 371 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+f+++tG CkyG++C+++H++ Cagra.5641s0032.1.p 346 GEVDCPFYLKTGSCKYGATCRYNHPE 371 6899********************96 PP | |||||||
5 | zf-CCCH | 40.2 | 5.7e-13 | 426 | 450 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+++++tG+Ck+G+rC+F+H+ Cagra.5641s0032.1.p 426 GQSECDYYMKTGECKFGERCRFHHP 450 7899********************8 PP | |||||||
6 | zf-CCCH | 41.7 | 1.9e-13 | 481 | 504 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+++++tGtCk+G++CkF H+p Cagra.5641s0032.1.p 481 VNCPYYMKTGTCKFGATCKFDHPP 504 68********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.169 | 175 | 203 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.13E-5 | 176 | 202 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0018 | 177 | 202 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-9 | 178 | 201 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.8E-5 | 181 | 200 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.652 | 226 | 254 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.3E-5 | 226 | 253 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-7 | 228 | 253 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.02E-6 | 231 | 255 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.8E-6 | 232 | 255 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.3 | 269 | 297 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-4 | 269 | 296 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.63E-6 | 272 | 297 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-5 | 274 | 295 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.7E-9 | 275 | 296 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.859 | 344 | 372 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-6 | 344 | 371 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.8E-10 | 346 | 371 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 348 | 372 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.1E-5 | 350 | 371 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.047 | 424 | 452 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.3E-6 | 424 | 451 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.55E-7 | 425 | 454 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-10 | 426 | 450 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.8E-6 | 430 | 451 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.169 | 477 | 505 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5E-7 | 477 | 504 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.0E-11 | 481 | 504 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 481 | 504 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.8E-5 | 483 | 502 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 527 aa Download sequence Send to blast |
MAHRQLYSYA LHHQPSYAAA SAVSPAPPPQ PQPPKTALSS LYGSSSVDHY YPDTTFRFLA 60 RDGSEALSNY NSGTLASSSA MYHHLPNTTA SHLGYPQLLQ HQEAAWPPGV EVPAAASAVE 120 PLPPGVKRTS EALYYPTLLG AHNTIGQTEA WYTTDYFTKR PKLESTSHLP IYPQRAGEKD 180 CTHYMQTRTC KFGDSCKFDH PVWVPEGGIP DWKEAPVVPN EEYPERPGEP DCPYYIKTQR 240 CKYGSRCKFN HPRAEAAATV ENQDALPERP SEPMCTFYMK TGKCKFGLTC KFHHPKDIQI 300 PSSSQDNGSS EGLTSDPDAT NNPHVTFTPA LYHNSKGLPV RPLLQGEVDC PFYLKTGSCK 360 YGATCRYNHP ERTAFIPQAT GINYSLLSSN AANLNLGMVT PATSLYQTLS QPTLGGLSAT 420 YPQRPGQSEC DYYMKTGECK FGERCRFHHP ADRLSATTKQ APQQPNVKLS LAGYPRREGA 480 VNCPYYMKTG TCKFGATCKF DHPPPGEVMA KTTSEADAAG AADTTQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.5641s0032.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY024357 | 0.0 | AY024357.1 Arabidopsis thaliana floral homeotic protein HUA1 (HUA1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023641285.1 | 0.0 | zinc finger CCCH domain-containing protein 37 isoform X1 | ||||
Swissprot | Q941Q3 | 0.0 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | R0I1T4 | 0.0 | R0I1T4_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.5641s0032.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9761 | 28 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 0.0 | floral homeotic protein (HUA1) |
Link Out ? help Back to Top | |
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Phytozome | Cagra.5641s0032.1.p |