PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.5525s0002.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Dof
Protein Properties Length: 451aa    MW: 48868.2 Da    PI: 5.2653
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.5525s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.73.1e-39132191261
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                          ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ 
  Cagra.5525s0002.1.p 132 PDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKSP 191
                          7899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-32128189IPR003851Zinc finger, Dof-type
PfamPF027016.2E-32134190IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.612136190IPR003851Zinc finger, Dof-type
PROSITE patternPS013610138174IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MADPAIKLFG KTIPLPELGG VVVDSSCSSS FTGVLLTTED QDQNPLRLSD SCTGADEDDD  60
DEDMGGGGES ESDKKEEKDN ECKEGSLKQE SNDVTTTSGI TDKTETTKAA KKTNEESSGG  120
TACSQEAKLK KPDKILPCPR CNSMETKFCY YNNYNVNQPR HFCKKCQRYW TAGGTMRNVP  180
VGAGRRKNKS PASHYNRHVS ITSGEGMQKA VRSDLQHPNG ANLLTFGSDS VLCESMASGL  240
NLAEKSLLKT QTVLQEPSEG LKITVPLNPS NEEAGTVISP LPKVPCFPGP PTWPYAWNGV  300
SWTVLPFYPP PAYWSCPGVS PGAWNNFTWM PQPNSPSGSG PNSPTLGKHS RDESAAEQGT  360
SFEETESLGR EKSKPERCLW VPKTLRVDDP EEAAKSSIWE TLGIKKDENA DTFGAFRSST  420
KEKSSLPGRR PELQANPAAL SRSTNFHETS *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269|PubMed:19619493}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00046PBMTransfer from AT5G39660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.5525s0002.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269|PubMed:19619493}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0157910.0BT015791.1 Arabidopsis thaliana At5g39660 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283563.20.0cyclic dof factor 2
SwissprotQ93ZL50.0CDF2_ARATH; Cyclic dof factor 2
TrEMBLR0F4Y80.0R0F4Y8_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.5525s0002.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137951825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.20.0cycling DOF factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]