PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.5478s0006.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 324aa    MW: 35382.3 Da    PI: 10.2246
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.5478s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.2e-30242299359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D+y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+ +d +++++tYegeH+h+
  Cagra.5478s0006.1.p 242 DEYSWRKYGQKPIKGSPHPRGYYKCSTFrGCPARKHVERALDDSTMLIVTYEGEHRHN 299
                          9************************8766****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105338.7E-18189238IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.5E-32228300IPR003657WRKY domain
PROSITE profilePS5081129.976235301IPR003657WRKY domain
SuperFamilySSF1182903.14E-26238300IPR003657WRKY domain
SMARTSM007742.0E-36240300IPR003657WRKY domain
PfamPF031062.0E-26242298IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MTVDIMRIPK MEDQTAIQEA ASQGLQSMEH LIRILSNPPQ ERSNVDCSEI TDFTVSKFKK  60
VISLLNRTGH ARFRRGPVHS PPPPPPPPPP APVPVPVQIS APVSFVQSNQ QSVTLDFTRP  120
SSFGAKTKSC SEVVEFAKES FSVSSNNSSF MSSAITGDGS VSKGSSIFLA PANPLPSSAK  180
PPLSGLPYRK RCFEHDHSEN FSGKISGSGN GKCHCKKSRK NRMKRTVRVP AISAKIADIP  240
PDEYSWRKYG QKPIKGSPHP RGYYKCSTFR GCPARKHVER ALDDSTMLIV TYEGEHRHNQ  300
SAMQENIMMT TTPSVSGLVF GSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-21228299272WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00278DAPTransfer from AT2G24570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.5478s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935620.0AB493562.1 Arabidopsis thaliana At2g24570 mRNA for hypothetical protein, partial cds, clone: RAAt2g24570.
GenBankAF4258360.0AF425836.1 Arabidopsis thaliana WRKY transcription factor 17 (WRKY17) mRNA, complete cds.
GenBankAK2276040.0AK227604.1 Arabidopsis thaliana mRNA for WRKY transcription factor 17, complete cds, clone: RAFL14-20-C13.
GenBankBT0064240.0BT006424.1 Arabidopsis thaliana At2g24570 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293496.20.0probable WRKY transcription factor 17
SwissprotQ9SJA80.0WRK17_ARATH; Probable WRKY transcription factor 17
TrEMBLR0HAG80.0R0HAG8_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.5478s0006.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25082772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24570.10.0WRKY DNA-binding protein 17
Publications ? help Back to Top
  1. Ali MA,Wieczorek K,Kreil DP,Bohlmann H
    The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots.
    PLoS ONE, 2014. 9(7): p. e102360
    [PMID:25033038]
  2. Ali MA, et al.
    Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis.
    J. Plant Physiol., 2018. 226: p. 12-21
    [PMID:29689430]