PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.5224s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | TALE | ||||||||
Protein Properties | Length: 677aa MW: 74428.3 Da PI: 6.873 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.7 | 1.1e-09 | 475 | 512 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe n+yps +++ LA+++gL+ +qV++WF N R + Cagra.5224s0008.1.p 475 FEHflNPYPSDADKHLLARQTGLSRNQVSNWFINARVR 512 665569******************************88 PP | |||||||
2 | BELL | 124.1 | 5.4e-40 | 333 | 404 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLls+leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+a q+ Cagra.5224s0008.1.p 333 DRIEHQRRKVKLLSMLEEVDRRYNHYCEQMQMVVNSFDQVMGYGAAVPYTTLAQKAMSRHFRCLKDAVAAQL 404 589******************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.1E-84 | 255 | 402 | IPR006563 | POX domain |
Pfam | PF07526 | 7.2E-51 | 261 | 401 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.86 | 453 | 516 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-9 | 456 | 520 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.22E-12 | 456 | 517 | No hit | No description |
SuperFamily | SSF46689 | 1.37E-17 | 457 | 523 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-28 | 459 | 522 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.1E-18 | 473 | 512 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 677 aa Download sequence Send to blast |
MGLVTTTTTT TLLHHQDLDS SSSMSQDYHH HHHHHQGIFS FSNGFHRSSS TTHQEEVDES 60 AVSGTAQIPV YESSAGMLSE MFAYPGGGGG GGGSSGEILD QSSTKQLLEQ QNRHNSSTLH 120 MLLPNHHQQQ GFAFTDENTI QEQQQQHFTW PSSSDHHQQQ NRDMIGTVHV EGGKGLSLSL 180 SSSLAAAKAE EYRSIYCAAV DGTSSSSNAS AHHHQYNQFK NLLLDNSSSS HHHHHQVVGH 240 FGSSSSSPIA ASSSIGGIYT LRNSKYTKPA QELLEEFCSV GRGHFKKNKL SRNNSNPNTT 300 GGGGGGGGGG GGGGGSSSSA GTANDSPPIS PADRIEHQRR KVKLLSMLEE VDRRYNHYCE 360 QMQMVVNSFD QVMGYGAAVP YTTLAQKAMS RHFRCLKDAV AAQLKRSCEL LGDKEGAGAA 420 SSGLTKGETP RLRLLEQSLR QQRAFHHMGM MEQEAWRPQR GLPERSVNIL RAWLFEHFLN 480 PYPSDADKHL LARQTGLSRN QVSNWFINAR VRLWKPMVEE MYQQEAKERE REEANENENE 540 NEQQRRQQQT NNNNNNNNDT KPNNNNENNF TTHVITTQTP TTMTSTHHDN DPSFLPSIVA 600 AASHGCSDAF TVTTCHQQDV VVSDFHVIDG AANVIRFGTK QPGDVSLTLG LRHSGNIPDN 660 NNNTSSFSVR DFGDFH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 7e-16 | 462 | 519 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 7e-16 | 462 | 519 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 299 | 315 | TGGGGGGGGGGGGGGGS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.5224s0008.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006293805.1 | 0.0 | BEL1-like homeodomain protein 4 | ||||
Swissprot | Q94KL5 | 0.0 | BLH4_ARATH; BEL1-like homeodomain protein 4 | ||||
TrEMBL | R0FUV8 | 0.0 | R0FUV8_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.5224s0008.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2166 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23760.3 | 0.0 | BEL1-like homeodomain 4 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.5224s0008.1.p |
Publications ? help Back to Top | |||
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