PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.5134s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | Dof | ||||||||
Protein Properties | Length: 224aa MW: 25046 Da PI: 8.2159 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 96.2 | 2.3e-30 | 1 | 51 | 11 | 61 |
zf-Dof 11 CdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 C+s+ntkfCy+nny sqPry Ck+Crr+Wt+GGalrnvP+Ggg+rk kk+ Cagra.5134s0001.1.p 1 CHSDNTKFCYFNNYRKSQPRYNCKNCRRHWTHGGALRNVPIGGGSRKIKKA 51 9**********************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 1.1E-26 | 1 | 50 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 7.0E-17 | 1 | 50 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 24.53 | 1 | 50 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
CHSDNTKFCY FNNYRKSQPR YNCKNCRRHW THGGALRNVP IGGGSRKIKK ARVEQPPASR 60 GMIPLDIHQF NPQPFPYLQG NNDFVGSFGA AAPVGNHFGP FPDLHGGMLA NVPPFQSFLP 120 NYLIDYQDVS FEQDFYDVGS VNPMINQSIG GGYVDNPDGY LISQVDQYEW SQLNFNNTAI 180 MDPGASTSGS RGPEDMTMTS DNIKRLKYNR VIKHTCHLEK HGP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00446 | DAP | Transfer from AT4G21080 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.5134s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006293054.1 | 1e-164 | dof zinc finger protein DOF4.5 | ||||
Swissprot | O49550 | 4e-61 | DOF45_ARATH; Dof zinc finger protein DOF4.5 | ||||
TrEMBL | R0FSX2 | 1e-163 | R0FSX2_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.5134s0001.1.p | 1e-167 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1602 | 17 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21080.1 | 2e-63 | Dof-type zinc finger domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.5134s0001.1.p |