PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.4909s0013.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | TALE | ||||||||
Protein Properties | Length: 739aa MW: 81071.3 Da PI: 6.9826 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.5 | 2.6e-09 | 513 | 550 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Cagra.4909s0013.1.p 513 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 550 664459******************************88 PP | |||||||
2 | BELL | 121.3 | 4e-39 | 371 | 442 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLl++leeVd+rY++y+eq+q+v++sF++v+g g+a pYt+lA+ka+SrhFrcLkda+a q+ Cagra.4909s0013.1.p 371 DRIEHQRRKVKLLTMLEEVDRRYNHYCEQMQMVVNSFDVVMGQGAALPYTALAQKAMSRHFRCLKDAVAAQL 442 589******************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.2E-76 | 301 | 440 | IPR006563 | POX domain |
Pfam | PF07526 | 2.9E-49 | 306 | 439 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.568 | 491 | 554 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-9 | 494 | 558 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.72E-12 | 494 | 555 | No hit | No description |
SuperFamily | SSF46689 | 3.34E-17 | 496 | 561 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.8E-29 | 497 | 560 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.7E-18 | 511 | 550 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 739 aa Download sequence Send to blast |
MGIAKTSSSS TCTILLKTLH NNSMSQDYHH QGGVFSFSNG FDRSDSPSLI THQKQEHQRV 60 EEMDEESSVA GGGIPVYETA GMLSEMFNFP GGSRGGRDLD HGQSFRSNRQ LLEEQHQNIP 120 ALNDSATATA AAMQLFLMNP PPPHQQQPPS PSSTSTTRSH HNSSTLHMLL PNPSTNTTHH 180 QSYDNNMSMH QQLPHHHNHQ QLTWQSSSSD HHHNSQTEIG TIHVENSGGQ GLSLSLSSSL 240 EAAAKAEEYR NIYYGANPSN ASPHHQYNQF KTLLANSSQH HQVLNQFRPS PTVAAASSSS 300 IGAVNILRHS RYTTSAQELL EEFCSVGRGF LKKNKQKNNS NPNASGGDGG GGSSPSSAGA 360 IKDHPTLSAS DRIEHQRRKV KLLTMLEEVD RRYNHYCEQM QMVVNSFDVV MGQGAALPYT 420 ALAQKAMSRH FRCLKDAVAA QLKQSCELLG DKDGAGMSSS GLTKGETPRL RLLEQSLRQQ 480 RAFHQMGMME QEAWRPQRGL PERSVNILRA WLFEHFLHPY PSDADKHLLA RQTGLSRNQV 540 SNWFINARVR LWKPMVEEMY QQESKERERE RERERDQEGL EGNEDDQETK NSNNDKSTKP 600 NDNNESNFTA ARTTSSQTPI TTAPDAAAVA TGHRLRSDIN AYENDPSSLL LPSSYSNAAA 660 AASADLGSRY GGGSAAFSAV ATCQQGVGGF VDADMAGVNV IRFGTNPTGD VSLTLGLRHA 720 GNMPDKDPSF CVRDFGGF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 1e-16 | 500 | 558 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 1e-16 | 500 | 558 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 1e-16 | 500 | 557 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 1e-16 | 500 | 557 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.4909s0013.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF173816 | 0.0 | AF173816.1 Arabidopsis thaliana bel1-like homeodomain 2 (BLH2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023634772.1 | 0.0 | BEL1-like homeodomain protein 2 isoform X1 | ||||
Swissprot | Q9SW80 | 0.0 | BLH2_ARATH; BEL1-like homeodomain protein 2 | ||||
TrEMBL | R0GH26 | 0.0 | R0GH26_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.4909s0013.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2166 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36870.2 | 0.0 | BEL1-like homeodomain 2 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.4909s0013.1.p |
Publications ? help Back to Top | |||
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