PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.4909s0004.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | BES1 | ||||||||
Protein Properties | Length: 323aa MW: 34500.4 Da PI: 8.8873 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 218.7 | 1.3e-67 | 19 | 159 | 2 | 145 |
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspe 91 +sgr+ptwkErEnnk+RERrRRai+akiy+GLRaqGnyklpk++DnneVlkALc eAGw+vedDGttyrkg kp+ ++++ g+ ++ s++ Cagra.4909s0004.1.p 19 SSGRTPTWKERENNKKRERRRRAITAKIYSGLRAQGNYKLPKHCDNNEVLKALCLEAGWIVEDDGTTYRKGLKPP-ASDISGTPTNFSTN 107 89*************************************************************************.************** PP DUF822 92 sslqsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlsl 145 ss+q s++ssa++sp++sy+ sp sssfpsps++d ++++ llp+l++ ++ Cagra.4909s0004.1.p 108 SSIQPSPQSSAFPSPAPSYHGSPVSSSFPSPSRYDGNPSS--YLLLPFLHNIAS 159 *************************************987..899999988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 3.8E-62 | 19 | 143 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009741 | Biological Process | response to brassinosteroid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MAAGGGTVGV GGGGGGGSSS GRTPTWKERE NNKKRERRRR AITAKIYSGL RAQGNYKLPK 60 HCDNNEVLKA LCLEAGWIVE DDGTTYRKGL KPPASDISGT PTNFSTNSSI QPSPQSSAFP 120 SPAPSYHGSP VSSSFPSPSR YDGNPSSYLL LPFLHNIASS IPANLPPLRI SNSAPVTPPL 180 SSPTSRGSKR KLTSEQLPNG GSLHALRHPL FAISAPSSPT RRAGHQTPPT IPECDESEED 240 SIEDSGRWIN FQSTAPTSPT FNLVKQTSMV IDMKRSDWGM NGRGADQFEF ENGTVKPWEG 300 EMIHEVGVED LELTLGGTKT RC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 2e-26 | 22 | 100 | 372 | 450 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 2e-26 | 22 | 100 | 372 | 450 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 2e-26 | 22 | 100 | 372 | 450 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 2e-26 | 22 | 100 | 372 | 450 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00474 | DAP | Transfer from AT4G36780 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.4909s0004.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY050394 | 0.0 | AY050394.1 Arabidopsis thaliana AT4g36780/C7A10_580 mRNA, complete cds. | |||
GenBank | AY097357 | 0.0 | AY097357.1 Arabidopsis thaliana AT4g36780/C7A10_580 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006284125.1 | 0.0 | BES1/BZR1 homolog protein 2 | ||||
Swissprot | Q94A43 | 0.0 | BEH2_ARATH; BES1/BZR1 homolog protein 2 | ||||
TrEMBL | R0H0R8 | 0.0 | R0H0R8_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.4909s0004.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11512 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36780.1 | 7e-97 | BES1/BZR1 homolog 2 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.4909s0004.1.p |