PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4686s0014.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Trihelix
Protein Properties Length: 541aa    MW: 59107.7 Da    PI: 6.893
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4686s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.92.1e-21158244186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +W++  + +L++a++++ ++l+rg+l++ +Weev++ +  r +++++s +qCk+k++nl+kryk ++++++++  +sss++p+f+++e
  Cagra.4686s0014.1.p 158 EWSDAAIACLLDAYSDKFTQLNRGNLRGRDWEEVASSVsdRCEKLSKSVEQCKNKIDNLKKRYKLERHRMSSG-GTSSSHWPWFKKME 244
                          5*************************************99999*****************************9.778889*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.4E-22156246No hitNo description
Gene3DG3DSA:3.40.1160.105.1E-68291532IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536334.71E-54299532IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042548.10E-121301533No hitNo description
PfamPF006969.9E-26302512IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MASCDDDFSL LGDDQSNPSQ HQHHHHHQVL HHTPYAPRRF TPKPSNQIHL SHHRRNGDED  60
DENDVVVEAS SAFHGVNPFV ADENSNPYDD NNAAVDEDED LGANRSRIGG VRVEKRQSQE  120
ELSDGGTTNG GETTPYGSFK RPRTSSSSAG EYRKDREEWS DAAIACLLDA YSDKFTQLNR  180
GNLRGRDWEE VASSVSDRCE KLSKSVEQCK NKIDNLKKRY KLERHRMSSG GTSSSHWPWF  240
KKMEDIVGNS LAMKGASDED RSGSSTGNAV KPARRYPLVT YNPGVQINNV KSKATSNPRW  300
RRVVLKISGA ALACTGPNNI DPKVINLIAR EVAMACRLGV EVAIVVGSRN FFCGSTWITA  360
TGLDRTTAYH ISMMASVMNS ALLQSSLEKI GVQARLQTAI SVQGVGEPYN RQRATRHLDK  420
GRVVIFGGIG ATLGNPLLSS DASAALRAID INAEAVVKGT NVDGVYDCHS QDSNVTFEHI  480
TFQDLASRGL TSMDTMALNF CEENNIPVVV FNFLEAGNIT KALCGEQVGT LIDRTGRGVS  540
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A3e-582925321239Uridylate kinase
3ek5_B3e-582925321239Uridylate kinase
3ek5_C3e-582925321239Uridylate kinase
3ek5_D3e-582925321239Uridylate kinase
3ek5_E3e-582925321239Uridylate kinase
3ek5_F3e-582925321239Uridylate kinase
3ek6_A3e-582925321239Uridylate kinase
3ek6_B3e-582925321239Uridylate kinase
3ek6_C3e-582925321239Uridylate kinase
3ek6_D3e-582925321239Uridylate kinase
3ek6_E3e-582925321239Uridylate kinase
3ek6_F3e-582925321239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.4686s0014.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3754310.0AF375431.1 Arabidopsis thaliana AT3g10030/T22K18_15 mRNA, complete cds.
GenBankAY1206870.0AY120687.1 Arabidopsis thaliana AT3g10030/T22K18_15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299115.10.0uncharacterized protein LOC17892207
TrEMBLR0I6J10.0R0I6J1_9BRAS; Uncharacterized protein
STRINGCagra.4686s0014.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93052631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein