PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.4686s0011.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Trihelix

Protein Properties

Length: 472aa MW: 53890.9 Da PI: 7.2465

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.4686s0011.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95	7e-30	90	176	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea Cagra.4686s0011.1.p 90 RWPRQETLMLLEVRSRLDHKFKESNQKGPLWDEVSRIMsEEHGYTRSGKKCREKFENLYKYYKKTKEGKAGR-RQDGKNYRFFRQLEA 176 8***********************************999*************************98.77888******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	4.8E-4	87	150	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	7.097	89	148	IPR017877	Myb-like domain
Pfam	PF13837	6.9E-20	90	177	No hit	No description
CDD	cd12203	6.87E-19	90	155	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010197	Biological Process	polar nucleus fusion

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
MEDHHHQNHQ VQYGIAQPSL HFSSDLFGFN LVSAPDQHHR PHLTDHEISF LPRGIQGLTV 60 AGNNSNSIVA STSCARGGFS GFTDGGGTGR WPRQETLMLL EVRSRLDHKF KESNQKGPLW 120 DEVSRIMSEE HGYTRSGKKC REKFENLYKY YKKTKEGKAG RRQDGKNYRF FRQLEAIYGE 180 SKDSVSCYDN SQFIMTNALH NFHAPNIHHN AVSHIHQNPL SNNTQSLSIS NNLNSSSELD 240 ISSSSEGNVS TRSEGMNWKE KIKEFIGIHI ERLIEKQDFW LEKLVKTVED KEHQRMVKEE 300 EWKRVEAARI EKERSLWTKE RERMEARDVA VIEALQYLTG KALIRPNSSS PTERINGNIS 360 DQTMADEENK SKMENKIMSK KRKEKWSSHG GNQLRIKENT MMIYDNQEDP SCDVEQGHHE 420 GYSPSNSKEG NPSCGIAMAA STNCFPMLVG DGDQNSWEGY GLKLRKEDNL Q*

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

MEDHHHQNHQ VQYGIAQPSL HFSSDLFGFN LVSAPDQHHR PHLTDHEISF LPRGIQGLTV  60
AGNNSNSIVA STSCARGGFS GFTDGGGTGR WPRQETLMLL EVRSRLDHKF KESNQKGPLW  120
DEVSRIMSEE HGYTRSGKKC REKFENLYKY YKKTKEGKAG RRQDGKNYRF FRQLEAIYGE  180
SKDSVSCYDN SQFIMTNALH NFHAPNIHHN AVSHIHQNPL SNNTQSLSIS NNLNSSSELD  240
ISSSSEGNVS TRSEGMNWKE KIKEFIGIHI ERLIEKQDFW LEKLVKTVED KEHQRMVKEE  300
EWKRVEAARI EKERSLWTKE RERMEARDVA VIEALQYLTG KALIRPNSSS PTERINGNIS  360
DQTMADEENK SKMENKIMSK KRKEKWSSHG GNQLRIKENT MMIYDNQEDP SCDVEQGHHE  420
GYSPSNSKEG NPSCGIAMAA STNCFPMLVG DGDQNSWEGY GLKLRKEDNL Q*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.4686s0011.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006299692.1	0.0	trihelix transcription factor PTL
Swissprot	Q9LZS0	1e-131	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	R0I3S2	0.0	R0I3S2_9BRAS; Uncharacterized protein
STRING	Cagra.4686s0011.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2767	28	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10000.1	0.0	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Cagra.4686s0011.1.p

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]