PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.4440s0003.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | TCP | ||||||||
Protein Properties | Length: 174aa MW: 19355.8 Da PI: 9.6568 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 97.4 | 2.7e-30 | 12 | 137 | 3 | 89 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..ssssaseceaesssssasnsssg.. 88 +++++h+++h vggRdRR+Rl+a++a ++F+L++eLGf +d++t++WLlq+a+pai ++tg ++++++ +++++ + Cagra.4440s0003.1.p 12 KATRSHKDRHVRVGGRDRRIRLPANVAPQLFKLTKELGFHTDGETVNWLLQNAEPAIFAATGHgiNTTPNNVINSNNNI--------Hry 93 5789***********************************************************7744444333111111........111 PP TCP 89 ...........................................k 89 Cagra.4440s0003.1.p 94 slisgnnctinniftctgvntghpemvfpgttmkehgtsstfpV 137 22222233444555555555555555555554444444444441 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.5E-26 | 16 | 125 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 21.86 | 17 | 71 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MVSRKEMKNQ QKATRSHKDR HVRVGGRDRR IRLPANVAPQ LFKLTKELGF HTDGETVNWL 60 LQNAEPAIFA ATGHGINTTP NNVINSNNNI HRYSLISGNN CTINNIFTCT GVNTGHPEMV 120 FPGTTMKEHG TSSTFPVKAE EDVPSQNPQQ QPQGPQLGFE CVKMEKKSYV WSE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required during early processes in pollen development. {ECO:0000269|PubMed:16786299}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00390 | DAP | Transfer from AT3G45150 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.4440s0003.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006292227.2 | 4e-97 | transcription factor TCP16 | ||||
Swissprot | Q9M1U4 | 2e-53 | TCP16_ARATH; Transcription factor TCP16 | ||||
TrEMBL | R0HIU4 | 8e-85 | R0HIU4_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | Cagra.4440s0003.1.p | 1e-128 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15750 | 10 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45150.1 | 6e-31 | TCP domain protein 16 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.4440s0003.1.p |
Publications ? help Back to Top | |||
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