PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.4399s0014.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

MYB_related

Protein Properties

Length: 981aa MW: 109309 Da PI: 7.7446

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.4399s0014.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22	3.9e-07	44	80	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 WT+ E e+++da +++ g+ Wk++a+ + ++R+ +++ Cagra.4399s0014.1.p 44 QWTKGELERFYDAYRKHVGD-WKKVANAVRNNRSVEMV 80 6***************99.*******99998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.79E-5	43	88	IPR009057	Homeodomain-like
CDD	cd00167	0.00339	45	80	No hit	No description
SMART	SM01135	4.2E-48	567	668	IPR033471	DIRP domain
Pfam	PF06584	8.5E-29	567	667	IPR033471	DIRP domain
SMART	SM00333	0.0084	654	711	IPR002999	Tudor domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 981 aa Download sequence Send to blast
MAPSKKLKSV NKRFTSEASS DINVGSSSKT NQRKKKLTDK LGPQWTKGEL ERFYDAYRKH 60 VGDWKKVANA VRNNRSVEMV EALFSMNRAY LSLPEGTASV AGLIAMMTDH YSVMEGSESE 120 GEDHDASGVL SKNQKRKRAK VQAIDFQEEA IPPRSVASTE GCLSLLKQTQ AFEKRRRATG 180 KRTPRFLVAI TYEGGDREDS TPSNKRAKKQ LDPDDDASRR GGGGSQYKRT ELSGSTPVRL 240 GKRLQAQEAQ SKHPDSCMFE NRVKISRDKR HKKGPTDIDD ALLMDMVPQK GKTVRVEEAE 300 GNDDDDDDDD DDDDDYAIQG LNALADLSAS LAPSGLIESE SSARREEERI ANNVGEKSST 360 LETVFTSHHR EKAKQVGPED SLLHEVSAAD KRKPKPVQEP VDGIAVSIGD LGTSKRKRKP 420 KFQVLDVEVS EESIQTKSLF TKESAEDDNL KTLVKARPAS EGPANQLKTA KTSEESSLTS 480 DKNITGPDAV VSASQVSPGP VALPQKRPDK RKMSLKKSLQ QRAISSETTH DKTRSFEKLS 540 EHELLQEKVS TCLSYPLVRR WCIFEWFYSA IDYPWFAKTE FTDYLNHVGL GHVPRLTRLE 600 WSVIKSSLGR PRRFSGRFLQ DERDKLQQYR ESVRRHYTEL RGCAREVLHT DLARPLSVGN 660 RVIAIHPKTR EIRDGKILTV DHDKCNVLFD ELGVELVMDI DCMPLNPLEY MPEGLRKKID 720 KCLSISKEAQ LNRHSNSDAS LLFSPPVPEN VKFSMNPPAK QDDISEPVLY NQELATNTSD 780 QSVKTNSQTR GTEIQRPLTL QRTSDEQEME PEIIEIVSGS KSIAQEMVDA AMKAALSEKN 840 NNSKEDSGNM VQQALSSNGK HQPLDNSLVS GIKHQQHTNG SLDHHPSNTA EPSNGFISSQ 900 DGSGKKKTQM PSELITSCVA TCLMIKMCTE KQYPPADVAQ LMETAVSGLQ PRCPQNMPIY 960 REIETCMGLI KTQIMALVRT *

Sequence ? help Back to Top

Protein Sequence Length: 981 aa Download sequence Send to blast

MAPSKKLKSV NKRFTSEASS DINVGSSSKT NQRKKKLTDK LGPQWTKGEL ERFYDAYRKH  60
VGDWKKVANA VRNNRSVEMV EALFSMNRAY LSLPEGTASV AGLIAMMTDH YSVMEGSESE  120
GEDHDASGVL SKNQKRKRAK VQAIDFQEEA IPPRSVASTE GCLSLLKQTQ AFEKRRRATG  180
KRTPRFLVAI TYEGGDREDS TPSNKRAKKQ LDPDDDASRR GGGGSQYKRT ELSGSTPVRL  240
GKRLQAQEAQ SKHPDSCMFE NRVKISRDKR HKKGPTDIDD ALLMDMVPQK GKTVRVEEAE  300
GNDDDDDDDD DDDDDYAIQG LNALADLSAS LAPSGLIESE SSARREEERI ANNVGEKSST  360
LETVFTSHHR EKAKQVGPED SLLHEVSAAD KRKPKPVQEP VDGIAVSIGD LGTSKRKRKP  420
KFQVLDVEVS EESIQTKSLF TKESAEDDNL KTLVKARPAS EGPANQLKTA KTSEESSLTS  480
DKNITGPDAV VSASQVSPGP VALPQKRPDK RKMSLKKSLQ QRAISSETTH DKTRSFEKLS  540
EHELLQEKVS TCLSYPLVRR WCIFEWFYSA IDYPWFAKTE FTDYLNHVGL GHVPRLTRLE  600
WSVIKSSLGR PRRFSGRFLQ DERDKLQQYR ESVRRHYTEL RGCAREVLHT DLARPLSVGN  660
RVIAIHPKTR EIRDGKILTV DHDKCNVLFD ELGVELVMDI DCMPLNPLEY MPEGLRKKID  720
KCLSISKEAQ LNRHSNSDAS LLFSPPVPEN VKFSMNPPAK QDDISEPVLY NQELATNTSD  780
QSVKTNSQTR GTEIQRPLTL QRTSDEQEME PEIIEIVSGS KSIAQEMVDA AMKAALSEKN  840
NNSKEDSGNM VQQALSSNGK HQPLDNSLVS GIKHQQHTNG SLDHHPSNTA EPSNGFISSQ  900
DGSGKKKTQM PSELITSCVA TCLMIKMCTE KQYPPADVAQ LMETAVSGLQ PRCPQNMPIY  960
REIETCMGLI KTQIMALVRT *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	505	512	KRPDKRKM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.4399s0014.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006287004.1	0.0	protein ALWAYS EARLY 1 isoform X1
Swissprot	Q6A331	0.0	ALY1_ARATH; Protein ALWAYS EARLY 1
TrEMBL	R0FCS2	0.0	R0FCS2_9BRAS; Uncharacterized protein
STRING	Cagra.4399s0014.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2962	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	5e-75	DNA binding

Link Out ? help Back to Top
Phytozome	Cagra.4399s0014.1.p

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]