PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.4396s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | B3 | ||||||||
Protein Properties | Length: 332aa MW: 39045.4 Da PI: 10.1453 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.5 | 2.1e-17 | 19 | 111 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrse 89 ffk++ ++d +++++ +p +f++++ +k s +++++ ++g+sW+v++ +k+ + y+++ GW +Fv++n L ++fv+F ++g++ Cagra.4396s0008.1.p 19 FFKIFQSADLSSESMRAFPYNFMSRIPEK-DLSYKMVIRAQWGKSWDVEV--SKNTRYYYIEkPGWDQFVSDNALGRNEFVTFIHKGKMI 105 99***99*******************544.5999****************..999988666637********************999888 PP E..EEEEE CS B3 90 felvvkvf 97 f +v ++ Cagra.4396s0008.1.p 106 F--NVYIY 111 8..66665 PP | |||||||
2 | B3 | 32.6 | 1.4e-10 | 236 | 310 | 10 | 87 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ++ ++ l +pk+f+++h + +sk t+ +++g +sW+v + + r+++++G ++ +++ L +gD ++Fkl++ Cagra.4396s0008.1.p 236 NSYLKFLAIPKHFVDDHLPQ--KSKFFTIHHPDGlKSWKVLC--LVREIRTIFSGGYSKLAREYPLLVGDKCTFKLIEP 310 44456799*********644..67789999************..8888899************************9864 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.35E-17 | 18 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-17 | 18 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.06E-16 | 19 | 111 | No hit | No description |
PROSITE profile | PS50863 | 12.872 | 19 | 114 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.0E-19 | 19 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.0E-16 | 19 | 111 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.55E-16 | 227 | 319 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.432 | 227 | 321 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-14 | 227 | 320 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.75E-12 | 228 | 309 | No hit | No description |
SMART | SM01019 | 6.9E-14 | 230 | 321 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.1E-9 | 233 | 310 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MGWNTGFERI KQERKDLGFF KIFQSADLSS ESMRAFPYNF MSRIPEKDLS YKMVIRAQWG 60 KSWDVEVSKN TRYYYIEKPG WDQFVSDNAL GRNEFVTFIH KGKMIFNVYI YEQNCMEILI 120 PRILMPMDCS GGIKREEEEC SYKDVKKEYE ETDESPERVE IKIRKKISEE SKTSKKKKTS 180 KRVKNGMERG GSSRGVELKD RKKKAEAYNT SKKMKKKIKR NKKMTGAPEF KITIRNSYLK 240 FLAIPKHFVD DHLPQKSKFF TIHHPDGLKS WKVLCLVREI RTIFSGGYSK LAREYPLLVG 300 DKCTFKLIEP YAFILDISKK TREEITHCMI D* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 163 | 177 | RKKISEESKTSKKKK |
2 | 211 | 219 | KKMKKKIKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.4396s0008.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023641319.1 | 0.0 | B3 domain-containing protein At3g17010 | ||||
Swissprot | Q9LSP6 | 1e-135 | Y3701_ARATH; B3 domain-containing protein At3g17010 | ||||
TrEMBL | R0I7T0 | 0.0 | R0I7T0_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.4396s0008.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G17010.1 | 1e-128 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.4396s0008.1.p |
Publications ? help Back to Top | |||
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