PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4395s0205.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NF-X1
Protein Properties Length: 1160aa    MW: 126810 Da    PI: 8.15
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4395s0205.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X122.52.4e-07363381119
             zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                          CG+H+C++ CH GpC+pC+
  Cagra.4395s0205.1.p 363 CGRHQCERACHVGPCDPCQ 381
                          ******************6 PP
2zf-NF-X1186.2e-06427444118
             zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                          CG+H C++ CH+GpC+ C
  Cagra.4395s0205.1.p 427 CGNHFCSEVCHPGPCGDC 444
                          ****************99 PP
3zf-NF-X121.35.9e-07489503418
             zf-NF-X1   4 HkCqklCHeGpCppC 18 
                          H+C++ CHeG+CppC
  Cagra.4395s0205.1.p 489 HTCNEVCHEGDCPPC 503
                          *************** PP
4zf-NF-X118.54.3e-06584602119
             zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                          CG+H+C++lCH G CppC 
  Cagra.4395s0205.1.p 584 CGQHSCESLCHSGHCPPCL 602
                          ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.87E-5185255No hitNo description
PROSITE profilePS500169.009193254IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.583196252IPR001841Zinc finger, RING-type
PROSITE patternPS013590196251IPR019786Zinc finger, PHD-type, conserved site
CDDcd060085.87E-6285346No hitNo description
SMARTSM004380.023308326IPR000967Zinc finger, NF-X1-type
PfamPF014228.7310325IPR000967Zinc finger, NF-X1-type
CDDcd060082.62E-12353401No hitNo description
SMARTSM004381.9E-4363382IPR000967Zinc finger, NF-X1-type
PfamPF014222.3E-5363380IPR000967Zinc finger, NF-X1-type
CDDcd060081.83E-8421462No hitNo description
SMARTSM004382.6E-5427446IPR000967Zinc finger, NF-X1-type
PfamPF014227.4E-5427444IPR000967Zinc finger, NF-X1-type
CDDcd060083.25E-13476523No hitNo description
SMARTSM004383.0E-5486505IPR000967Zinc finger, NF-X1-type
PfamPF014224.7E-5488503IPR000967Zinc finger, NF-X1-type
SMARTSM00438130545576IPR000967Zinc finger, NF-X1-type
PfamPF0142219545556IPR000967Zinc finger, NF-X1-type
CDDcd060081.23E-9574626No hitNo description
SMARTSM004382.0E-4584603IPR000967Zinc finger, NF-X1-type
PfamPF014221.0E-4584601IPR000967Zinc finger, NF-X1-type
CDDcd060082.01E-6631678No hitNo description
SMARTSM004380.079641659IPR000967Zinc finger, NF-X1-type
PfamPF01422140641658IPR000967Zinc finger, NF-X1-type
SMARTSM004380.02694724IPR000967Zinc finger, NF-X1-type
PfamPF014220.011694709IPR000967Zinc finger, NF-X1-type
CDDcd060087.45E-5722771No hitNo description
PfamPF0142289726752IPR000967Zinc finger, NF-X1-type
SMARTSM004380.17733754IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1160 aa     Download sequence    Send to blast
MSFHLRRDRN DDRSRFNSQH TWIPRSSSTS VGVVNEPSLP PTTDRYSGSL DTGAASRPAP  60
PPYNQQQRSN NIGPAPPNRQ RRNEAAGTLP DNQHHRSNFV GPPPPNRQRR NEAAGTLPNN  120
QHQRSNFTGP PPPNRQRRNN ASGTLPDDRQ RVSSRVRPVN QGKRVAKEEN IVMADPNLPQ  180
LVQELQEKLV KSSIECMICY DKVGRSANIW SCSSCYSIFH MNCIKRWARA PTSIDLLAEK  240
NQGDNWRCPG CQSVQLTSSK EICYRCFCGK RKDPPSDPYL TPHSCGEPCG KPLEKEFAAA  300
EITKEELCPH VCVLQCHPGP CPPCKAFAPP RSCPCGKKMV TTRCSERRSV IVCGQRCDKL  360
LNCGRHQCER ACHVGPCDPC QVLVDATCFC KKKVETVICG DMNVKGELKA EDGVYSCNFN  420
CGKPLGCGNH FCSEVCHPGP CGDCDLLPSR VKTCYCGKTR LEEQIRRSCL DPIPSCSNIC  480
RKLLPCRLHT CNEVCHEGDC PPCLVQVNQK CRCGSTSRAV ECYITTSSDT EKFVCAKPCG  540
CKKNCGRHRC SERCCPLMNK KKNDLSGDWD PHVCQIPCGK KLRCGQHSCE SLCHSGHCPP  600
CLEMIFTDLT CACGRTSIPP PLPCGTPVPS CQHPCSIPQS CGHSATHGCH FGDCPPCSAP  660
VEKKCVGGHV VLRNIPCGLK DIRCNKICGK TRRCGMHACA RTCHPEPCDN YNESEAGMRV  720
TCGQKCGAPR RDCRHTCGAL CHPSAPCPDR RCEFPVTITC SCGRITATVP CDAGGNSANG  780
SNIDSAAYDE ASILQKLPAP LQPVDGNRIP LGQRKLLCDD ECAKLERKRV LQDAFDITPP  840
NLEALHFSEN SAMTEIISDL YRRDPKWVLA VEERCKFLVL GRARGSTSAL KVHVFCPMQK  900
DKRETVRLIA ERWKLGVSNA GWEPKRFTVV HVTPKSKPPT RIIGARGGAI SIGGPHPPSF  960
DPLVDMDPGL VVSLLDLPRE ANISALVLRF GGECELVWLN DKNALAVFHD HARAATAMRR  1020
LEHGSVYHGA VVVQSGGQSP SLSNAWGKLP GGSAWDVNKG NPWKKAVIQE SDDSWGAEDS  1080
PIGGSSTDIQ ASALRAAKSN NPIATSVNRW SVLEPEKAST SNLECIGQIE ESTSSKANGK  1140
QPVEGSGEEV VDDWEKVCE*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.4395s0205.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0054890.0AC005489.1 Genomic sequence for Arabidopsis thaliana BAC F14N23 from Chromosome 1, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023645860.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A178WL380.0A0A178WL38_ARATH; NFXL1
STRINGCagra.4395s0205.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1