PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.4395s0081.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NF-YC | ||||||||
Protein Properties | Length: 232aa MW: 25615.7 Da PI: 4.8822 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 178.8 | 5.1e-56 | 58 | 161 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 ql++fwe+q iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaavtrtd Cagra.4395s0081.1.p 58 QLQAFWENQfkeIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTD 147 89******99999***************************************************************************** PP NF-YC 88 ifdflvdivprdel 101 ifdflvdivpr++l Cagra.4395s0081.1.p 148 IFDFLVDIVPREDL 161 ***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.04E-32 | 35 | 152 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 6.9E-38 | 72 | 144 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.8E-22 | 80 | 143 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MDQQEHGQSG AMNYGTNPYQ SNPMSTTAAT VAGGAAQQGQ LAFHQIHQQQ QQQQLAQQLQ 60 AFWENQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS AEAPVVFARA CEMFILELTL 120 RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGSIP RGTVPDAAAA 180 GYPYGYLPAG TAPIGNPGMV MGNPGGTYPP NPYMGQPMWQ QQGPDQPDAE N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 3e-64 | 66 | 158 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 136 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.4395s0081.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK316882 | 0.0 | AK316882.2 Arabidopsis thaliana AT1G08970 mRNA, complete cds, clone: RAFL14-04-L24. | |||
GenBank | AY085860 | 0.0 | AY085860.1 Arabidopsis thaliana clone 1911 mRNA, complete sequence. | |||
GenBank | AY126997 | 0.0 | AY126997.1 Arabidopsis thaliana At1g08970/F7G19_16 mRNA, complete cds. | |||
GenBank | AY143827 | 0.0 | AY143827.1 Arabidopsis thaliana At1g08970/F7G19_16 mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | F7G19 | 0.0 | AC000106.1 Sequence of BAC F7G19 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006304170.1 | 1e-173 | nuclear transcription factor Y subunit C-9 | ||||
Refseq | XP_023645327.1 | 1e-173 | nuclear transcription factor Y subunit C-9 | ||||
Swissprot | Q8L4B2 | 1e-141 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | R0I491 | 1e-171 | R0I491_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.4395s0081.1.p | 1e-173 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM478 | 28 | 160 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 6e-94 | nuclear factor Y, subunit C9 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.4395s0081.1.p |