PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.4395s0036.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

YABBY

Protein Properties

Length: 189aa MW: 21155.1 Da PI: 9.5468

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.4395s0036.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	254.4	1.9e-78	2	164	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekees 91 +v+ sse+vCyv+CnfC+tilavsvP++slf++vtvrCGhCt+lls+n+ ++ ++ + ++++++l+ ++++++s v++++ Cagra.4395s0036.1.p 2 SVDLSSERVCYVHCNFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQSSP---------PPIHQDLQPHKQHITSSVTRKDY 82 67889******************************************998876554.........45888888888888888888877 PP YABBY 92 astsvssekl....senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s+s+s++++ sen d+e+pr+pp irPPekrqrvPsaynrfikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl Cagra.4395s0036.1.p 83 GSSSRSTNHMsttmSENIDREAPRMPP-IRPPEKRQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGL 164 7777776666555599****999.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.2E-72	6	164	IPR006780	YABBY protein
SuperFamily	SSF47095	1.11E-7	109	157	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.7E-4	112	158	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MSVDLSSERV CYVHCNFCTT ILAVSVPYAS LFTLVTVRCG HCTNLLSLNI GVSLHQSSPP 60 PIHQDLQPHK QHITSSVTRK DYGSSSRSTN HMSTTMSENI DREAPRMPPI RPPEKRQRVP 120 SAYNRFIKEE IQRIKACNPE ISHREAFSTA AKNWAHFPHI HFGLKLDGNK KGKQLDQTVA 180 SQKSNGYC*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.4395s0036.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353326	0.0	AK353326.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-D23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006303358.1	1e-140	putative axial regulator YABBY 2
Swissprot	Q9XFB0	1e-125	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	R0GKG1	1e-139	R0GKG1_9BRAS; Uncharacterized protein
STRING	Cagra.4395s0036.1.p	1e-140	(Capsella grandiflora)
STRING	XP_006303358.1	1e-140	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5581	27	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	1e-127	YABBY family protein

Link Out ? help Back to Top
Phytozome	Cagra.4395s0036.1.p

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]