PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.4395s0022.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bZIP | ||||||||
Protein Properties | Length: 489aa MW: 54308.1 Da PI: 8.1062 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.8 | 3.1e-10 | 184 | 225 | 4 | 45 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L Cagra.4395s0022.1.p 184 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLSQLEQEL 225 6889*************************8766666655544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.6E-7 | 181 | 258 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.289 | 183 | 227 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.0E-7 | 184 | 225 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 7.5E-7 | 185 | 227 | No hit | No description |
CDD | cd14708 | 8.15E-23 | 185 | 237 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.0E-7 | 186 | 229 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 188 | 203 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 2.5E-29 | 266 | 341 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 489 aa Download sequence Send to blast |
MANHRISEAT NHNHNHHHLP YSLLHGLNNN HPPPAFINQD GSGSFDFGEL EEAIVLQGVK 60 YRNDEAKPPL LGGGGGGGTT LEMFPSWPIR THQTLPTESS KSGGESSDSG SAHFSGKAES 120 QQPDSPMSSK PQNHHLMLQH HNNNNNMANS SSTSALPSTS RTLPPPKPSE DKRKATTSGK 180 QLDAKTLRRL AQNREAARKS RLRKKAYVQQ LESSRIKLSQ LEQELQRARS QGLFMGGCGP 240 PGSNITSGAA MFDMEYGRWL EDDNRHMSEI RTGLQAHLSD NDLRLIVDGY IAHFDEIFRL 300 KAVAAKADVF HLIIGTWMSP AERCFIWMAG FRPSDLIKIL VTQMDLLTEQ QLMGIYSLQH 360 SSQQAEEALS QGLEQLQQSL IDTLAASPVV DGMQQMAVAL GKISNLEGFI RQADNLRQQT 420 VHQLRRILTV RQAARCFLVI GEYYGRLRAL SSLWLSRPRE TLMSDETSCQ TTTDLQIVQS 480 SRNHFSNF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00131 | DAP | Transfer from AT1G08320 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.4395s0022.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ314757 | 0.0 | AJ314757.1 Arabidopsis thaliana mRNA for bZIP transcription factor (AtbZIP21 gene). | |||
GenBank | HQ132743 | 0.0 | HQ132743.1 Arabidopsis thaliana bZIP21 (At1g08320) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006303631.1 | 0.0 | transcription factor TGA9 | ||||
Refseq | XP_023644758.1 | 0.0 | transcription factor TGA9 | ||||
Swissprot | Q93XM6 | 0.0 | TGA9_ARATH; Transcription factor TGA9 | ||||
TrEMBL | A0A1J3D5K8 | 0.0 | A0A1J3D5K8_NOCCA; TGACG-sequence-specific DNA-binding protein TGA-2.1 | ||||
STRING | Cagra.4395s0022.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5524 | 24 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08320.3 | 0.0 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.4395s0022.1.p |
Publications ? help Back to Top | |||
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